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Mutual information for protein sequence alignments
Combine multi-dimensional arrays
AcceptanceSampling
Creation and evaluation of Acceptance Sampling Plans
accuracy
Tools for testing and improving accuracy of statistical results.
acepack
ace() and avas() for selecting regression transformations
actuar
Actuarial functions
ada
Performs boosting algorithms for a binary response
adabag
Applies Adaboost.M1 and Bagging
ADaCGH
Analysis of data from aCGH experiments
adapt
adapt -- multidimensional numerical integration
AdaptFit
Adaptive Semiparametic Regression
ade4
Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences
ade4TkGUI
ade4 Tcl/Tk Graphical User Interface
adegenet
Genetic data handling for multivariate analysis using ade4
adehabitat
Analysis of habitat selection by animals
adimpro
Adaptive Smoothing of Digital Images
adlift
An adaptive lifting scheme algorithm
ads
Spatial point patterns analysis
agce
analysis of growth curve experiments
agricolae
Statistical Procedures for Agricultural Research
agsemisc
Miscellaneous plotting and utility functions
AIS
Tools to look at the data ("Ad Inidicia Spectata")
akima
Interpolation of irregularly spaced data
AlgDesign
AlgDesign
allelic
A fast, unbiased and exact allelic exact test
alr3
Methods and data to accompany Applied Linear Regression 3rd edition
amap
Another Multidimensional Analysis Package
Amelia
Amelia II: A Program for Missing Data
AMORE
A MORE flexible neural network package
analogue
Analogue methods for palaeoecology
AnalyzeFMRI
Functions for analysis of fMRI datasets stored in the ANALYZE format.
animation
Demonstrate Animations in Statistics
anm
Analog model for downscaling
aod
Analysis of Overdispersed Data
ape
Analyses of Phylogenetics and Evolution
aplpack
Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, ...
apTreeshape
Analyses of Phylogenetic Treeshape
ArDec
Time series autoregressive decomposition
ARES
Allelic richness estimation, with extrapolation beyond the sample size
argosfilter
Argos locations filter
arm
Data Analysis Using Regression and Multilevel/Hierarchical Models
arrayImpute
Missing imputation for microarray data
arrayMissPattern
Exploratory analysis of Missing patterns for microarray data
ars
Adaptive Rejection Sampling
arules
Mining Association Rules and Frequent Itemsets
arulesSequences
Mining frequent sequences
ash
David Scott's ASH routines
aspace
A collection of functions for estimating centrographic statistcs and computational geometries from spatial point patterns
assist
A Suite of S-Plus Functions Implementing Smoothing Splines
aster
Aster Models
asuR
Advanced statistics using R
asypow
Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
aws
Adaptive Weights Smoothing
BACCO
Bundle of emulator, calibrator, approximator
backtest
Exploring portfolio-based conjectures about financial instruments
BARD
Better Automated ReDistricting
bayescount
Bayesian analysis of count distributions with JAGS
bayesm
Bayesian Inference for Marketing/Micro-econometrics
bayesmix
Bayesian Mixture Models with JAGS
bayesSurv
Bayesian Survival Regression with Flexible Error and Random Effects Distributions
BayesTree
Bayesian Methods for Tree Based Models
BayesValidate
BayesValidate Package
BayHaz
R Functions for Bayesian Hazard Rate Estimation
bbmle
Tools for general maximum likelihood estimation
bcp
Bayesian Change Point
benchden
28 benchmark densities from Berlinet/Devroye (1994)
betareg
Beta Regression.
Bhat
General likelihood exploration
BHH2
Useful Functions for Box, Hunter and Hunter II
BiasedUrn
Biased Urn model distributions
bicreduc
Reduction algorithm for the NPMLE for the distribution function of bivariate interval-censored data
biglm
bounded memory linear and generalized linear models
bim
Bayesian Interval Mapping Diagnostics
bindata
Generation of Artificial Binary Data
binGroup
Evaluation and experimental design for binomial group testing
binMto
Asymptotic simultaneous confdence intervals for many-to-one comparisons of proportions
binom
Binomial Confidence Intervals For Several Parameterizations
bio.infer
Compute biological inferences
Biodem
Biodemography functions
BiodiversityR
GUI for biodiversity and community ecology analysis
biopara
Self-contained parallel system for R
biOps
Basic image operations and image processing
bitops
Functions for Bitwise operations
bivpois
Bivariate Poisson Models Using The EM Algorithm
blighty
United Kingdom coastlines
blockrand
Randomization for block random clinical trials
blockTools
Block, randomly assign, and diagnose potential problems between units in randomized experiments
BMA
Bayesian Model Averaging
bnlearn
Bayesian network structure learning
boa
Bayesian Output Analysis Program (BOA) for MCMC
Bolstad
Bolstad functions
boolean
Boolean Binary Response Models
boost
Boosting Methods for Real and Simulated Data
boot
Bootstrap R (S-Plus) Functions (Canty)
BootCL
Bootstrapping test for chromosomal localization
bootStepAIC
Bootstrap stepAIC
bootstrap
Functions for the Book "An Introduction to the Bootstrap"
bqtl
Bayesian QTL mapping toolkit
BradleyTerry
Bradley-Terry models
brainwaver
Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory.
brew
Templating Framework for Report Generation
brlr
Bias-reduced logistic regression
Brobdingnag
Very large numbers in R
BRugs
OpenBUGS and its R / S-PLUS interface BRugs
bs
Package for the Birnbaum-Saunders distribution
BSDA
Basic Statistics and Data Analysis
BsMD
Bayes Screening and Model Discrimination
butler
Unit testing, profiling and benchmarking for R
ca
Simple, Multiple and Joint Correspondence Analysis
cacheSweave
Tools for caching Sweave computations
Cairo
R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output.
cairoDevice
Cairo-based cross-platform antialiased graphics device driver.
calib
Statistical tool for calibration of plate based bioassays
calibrate
Calibration of Biplot Axes
caMassClass
Processing & Classification of Protein Mass Spectra (SELDI) Data
car
Companion to Applied Regression
CarbonEL
Carbon Event Loop
caret
Classification and Regression Training
caretLSF
Classification and Regression Training LSF Style
caretNWS
Classification and Regression Training in Parallel Using NetworkSpaces
cat
Analysis of categorical-variable datasets with missing values
catmap
Case-control And Tdt Meta-Analysis Package
caTools
Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
catspec
Special models for categorical variables
cba
Clustering for Business Analytics
CCA
Canonical correlation analysis
cclust
Convex Clustering Methods and Clustering Indexes
CDNmoney
Components of Canadian Monetary and Credit Aggregates
celsius
Retrieve Affymetrix microarray measurements and metadata from Celsius
cfa
Analysis of configuration frequencies (CFA)
cggd
Continuous Generalized Gradient Descent
cgh
Microarray CGH analysis using the Smith-Waterman algorithm
cghFLasso
Detecting hot spot on CGH array data with fused lasso regression.
CGIwithR
CGI Programming in R
changeLOS
Change in LOS
chemCal
Calibration functions for analytical chemistry
choplump
Choplump tests
chplot
Augmented Convex Hull Plots
chron
Chronological objects which can handle dates and times
CircStats
Circular Statistics, from "Topics in circular Statistics" (2001)
circular
Circular Statistics
clac
Clust Along Chromosomes, a method to call gains/losses in CGH array data
classGraph
Construct Graph of S4 Class Hierarchies
classifly
Explore classification models in high dimensions
classInt
Choose univariate class intervals
classPP
Projection Pursuit for supervised classification
clim.pact
Climate analysis and empirical-statistical downscaling (ESD) package for monthly and daily data.
climatol
Some Tools for Climatology
clines
Calculates Contour Lines
clinfun
Clinical Trial Design and Data Analysis Functions
clue
Cluster ensembles
cluster
Cluster Analysis Extended Rousseeuw et al.
clusterfly
Explore clustering interactively using R and GGobi
clusterGeneration
random cluster generation (with specified degree of separation)
clusterRepro
Reproducibility of gene expression clusters
clusterSim
Searching for optimal clustering procedure for a data set
clustTool
GUI for clustering data with spatial information
clustvarsel
Variable Selection for Model-Based Clustering
clv
Cluster Validation Techniques
clValid
Validation of Clustering Results
cmprsk
Subdistribution Analysis of Competing Risks
cobs99
Constrained B-splines -- outdated 1999 version
cobs
COBS -- Constrained B-splines (Sparse matrix based)
CoCo
Bundle of CoCoGraph, CoCoObjects, CoCoCore, CoCoOldData, CoCoRaw, CoCo, CoCoCg
cocorresp
Co-correspondence analysis ordination methods for community ecology
coda
Output analysis and diagnostics for MCMC
codetools
Code Analysis Tools for R
coin
Conditional Inference Procedures in a Permutation Test Framework
colorRamps
Builds color tables
colorspace
Colorspace Manipulation
combinat
combinatorics utilities
ComPairWise
Compare phylogenetic or population genetic data alignments
CompetingRiskFrailty
Competing Risk Model with Frailties for Right Censored Survival Data
compositions
Compositional Data Analysis
compOverlapCorr
Comparing overlapping correlation coefficients
concor
Concordance
concord
Concordance and reliability
conf.design
Construction of factorial designs
connectedness
Find disconnected subsets for a two-way classification
contrast
A collection of contrast methods
copula
Multivariate Dependence with Copula
corpcor
Efficient Estimation of Covariance and (Partial) Correlation
corpora
Statistics for corpus linguists
CORREP
Multivariate Correlation Estimator and Statistical Inference Procedures.
corrgram
Plot a correlogram
covRobust
Robust Covariance Estimation via Nearest Neighbor Cleaning
coxphf
Cox regression with Firth's penalized likelihood
coxrobust
Robust Estimation in Cox Model
CPGchron
Create radiocarbon-dated depth chronologies
cramer
Multivariate nonparametric Cramer-Test for the two-sample-problem
CreditMetrics
Functions for calculating the CreditMetrics risk model
crossdes
Design and Randomization in Crossover Studies
crosshybDetector
Detection of cross-hybridization events in microarray experiments
crq
Censored Quantile Regression
cslogistic
Conditionally Specified Logistic Regression
CTFS
The CTFS Large Plot Forest Dynamics Analyses
cts
Continuous Time Autoregressive Models
ctv
CRAN Task Views
CVThresh
Level-Dependent Cross-Validation Thresholding
cwhmisc
Bundle of cwhmath, cwhstring, cwhplot, cwhprint, cwhstat, cwhtool
cyclones
Cyclone identification
DAAG
Data Analysis And Graphics
DAAGbio
Data Sets and Functions, for demonstrations with expression arrays.
DAAGxtras
Data Sets and Functions, supplementary to DAAG
date
Functions for handling dates
Davies
The Davies quantile function
DBI
R Database Interface
dblcens
Compute the NPMLE of distribution from doubly censored data
DCluster
Functions for the detection of spatial clusters of diseases
ddesolve
Solver for Delay Differential Equations
DDHFm
Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
deal
Learning Bayesian Networks with Mixed Variables
debug
MVB's debugger for R
Defaults
Create Global Function Defaults
deldir
Delaunay Triangulation and Dirichlet (Voronoi) Tessellation.
delt
Estimation of multivariate densities with adaptive histograms
demogR
Analysis of age-structured demographic models
denpro
Visualization of multivariate, functions, sets, and data
DEoptim
Differential Evolution Optimization
depmix
Dependent Mixture Models
DescribeDisplay
R interface to DescribeDisplay (GGobi plugin)
Design
Design Package
desirability
Desirabiliy Function Optimization and Ranking
Devore5
Data sets from Devore's "Prob and Stat for Eng (5th ed)"
Devore6
Data sets from Devore's "Prob and Stat for Eng (6th ed)"
Devore7
Data sets from Devore's "Prob and Stat for Eng (7th ed)"
dglm
Double generalized linear models
diamonds
Analysis and sampling grids from diamond partitions
dice
Calculate Probabilities of Various Dice-Rolling Events
dichromat
Color schemes for dichromats
DICOM
Import medical imaging data using the DICOM Standard
digest
Create cryptographic hash digests of R objects
diptest
Hartigan's dip test statistic for unimodality - corrected code
dispmod
Dispersion models.
distr
Object orientated implementation of distributions
distrDoc
Documentation for packages distr, distrEx, distrSim, distrTEst
distrEx
Extensions of package distr
distributions
Probability distributions based on TI-83 Plus
distrSim
Simulation classes based on package distr
distrTEst
Estimation and Testing classes based on package distr
diveMove
Dive analysis and calibration
dlm
Functions for DLM Analysis
doBy
Groupwise computations of summary statistics
dplR
Dendrochronology Program Library in R
DPpackage
Bayesian Nonparametric and Semiparametric Analysis
dprep
Data preprocessing and visualization functions for classification
dr
Methods for dimension reduction for regression
drc
Analysis of dose-response curves
drfit
Dose-response data evaluation
drm
Regression and association models for repeated categorical data
dse
Bundle of dse1, dse2
dtt
Discrete Trigonometric Transforms
dyn
Time Series Regression
dynamicGraph
dynamicGraph
dynlm
Dynamic Linear Regression
e1071
Misc Functions of the Department of Statistics (e1071), TU Wien
earth
Multivariate Adaptive Regression Spline Models
eba
Elimination-By-Aspects (EBA) Models
EbayesThresh
Empirical Bayes thresholding and related methods
Ecdat
Data sets for econometrics
ecespa
Functions for spatial point pattern analysis
eco
R Package for Ecological Inference in 2x2 Tables
ecodist
Dissimilarity-based functions for ecological analysis
edci
Edge Detection and Clustering in Images
effects
Effect Displays for Linear and Generalized Linear Models
eha
Event History Analysis
eigenmodel
Semiparametric factor and regression models for symmetric relational data
eiPack
eiPack: Ecological Inference and Higher-Dimension Data Management
elasticnet
Elastic Net Regularization and Variable Selection
ElemStatLearn
Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman.
ellipse
Functions for drawing ellipses and ellipse-like confidence regions
elliptic
elliptic functions
elrm
Exact Logistic Regression via MCMC
emdbook
Ecological models and data (book support)
emme2
Read and Write to an EMME/2 databank
emplik
Empirical likelihood ratio for censored/truncated data
EMV
Estimation of Missing Values for a Data Matrix
energy
E-statistics (energy statistics) tests of fit, independence, clustering
ensembleBMA
Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
Epi
A package for statistical analysis in epidemiology.
epibasix
Elementary Epidemiological Functions for a Graduate Epidemiology\Biostatistics Course
epicalc
Epidemiological calculator
epitools
Epidemiology Tools
epsi
Edge Preserving Smoothing for Images
equivalence
Provides tests and graphics for assessing tests of equivalence
eRm
Extended Rasch Modeling.
evd
Functions for extreme value distributions
evdbayes
Bayesian Analysis in Extreme Value Theory
evir
Extreme Values in R
exactLoglinTest
Monte Carlo Exact Tests for Log-linear models
exactmaxsel
Maximally selected statistics for binary response variables - Exact methods
exactRankTests
Exact Distributions for Rank and Permutation Tests
experiment
experiment: R package for designing and analyzing randomized experiments
extRemes
Extreme value toolkit.
FactoMineR
Factor Analysis and Data Mining with R
Fahrmeir
Data from the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz
fame
Interface for FAME time series database
far
Modelization for Functional AutoRegressive processes
faraway
Functions and datasets for books by Julian Faraway.
fArma
Rmetrics - ARMA Time Series Modelling
fAsianOptions
Rmetrics - EBM and Asian Option Valuation
fAssets
Rmetrics - Assets Selection and Modelling
fastICA
FastICA Algorithms to perform ICA and Projection Pursuit
fBasics
Rmetrics - Markets and Basic Statistics
fBonds
Rmetrics - Bonds and Interest Rate Models
fCalendar
Rmetrics - Chronological and Calendarical Objects
fCopulae
Rmetrics - Dependence Structures with Copulas
fda
Functional Data Analysis
fdim
Functions for calculating fractal dimension.
fdrtool
Estimation and Control of (Local) False Discovery Rates
feature
Feature significance for multivariate kernel density estimation
fEcofin
Ecofin - Economic and Financial Data Sets
femmeR
Output analysis of FEMME model results
fExoticOptions
Rmetrics - Exotic Option Valuation
fExtremes
Rmetrics - Extreme Financial Market Data
ff
flat-file library
ffmanova
Fifty-fifty MANOVA
fgac
Generalized Archimedean Copula
fGarch
Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
fields
Tools for spatial data
FieldSim
Random fields simulations
filehash
Simple key-value database
filehashSQLite
Simple key-value database using SQLite
fImport
Rmetrics - Economic and Financial Data Import
financial
Solving financial problems in R
fingerprint
Functions to operate on binary fingerprint data
FKBL
fuzzy knowledge base learning
flexclust
Flexible Cluster Algorithms
flexmix
Flexible Mixture Modeling
Flury
Data Sets from Flury, 1997
fmri
Analysis of fMRI experiments
fMultivar
Rmetrics - Multivariate Market Analysis
fNonlinear
Rmetrics - Nonlinear and Chaotic Time Series Modelling
fOptions
Rmetrics - Basics of Option Valuation
forecasting
Bundle of forecast, fma, Mcomp
foreign
Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, ...
forensic
Statistical Methods in Forensic Genetics
fork
R functions for handling multiple processes.
fortunes
R Fortunes
forward
Forward search
fpc
Fixed point clusters, clusterwise regression and discriminant plots
fPortfolio
Rmetrics - Portfolio Selection and Optimization
fracdiff
Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
FracSim
Simulation of L?y motions
fractal
Insightful Fractal Time Series Modeling and Analysis
frailtypack
Frailty models using maximum penalized likelihood estimation
fRegression
Rmetrics - Regression Based Decision and Prediction
fSeries
Rmetrics - Financial Time Series Objects
fso
Fuzzy Set Ordination
ftnonpar
Features and Strings for Nonparametric Regression
fTrading
Rmetrics - Technical Trading Analysis
FunCluster
Functional Profiling of Microarray Expression Data
fUnitRoots
Rmetrics - Trends and Unit Roots
fUtilities
Utilities - Rmetrics Function Utilities
fuzzyFDR
Exact calculation of fuzzy decision rules for multiple testing
fuzzyRankTests
Fuzzy Rank Tests and Confidence Intervals
fxregime
Exchange Rate Regime Analysis
g.data
Delayed-Data Packages
G1DBN
A package performing Dynamic Bayesian Network inference.
gafit
Genetic Algorithm for Curve Fitting
gam
Generalized Additive Models
gamair
Data for "GAMs: An Introduction with R"
GAMBoost
Generalized additive models by likelihood based boosting
gamlss.cens
Fitting interval response variabble using gamlss.family distributions
gamlss.dist
Extra distributions to be used for GAMLSS modelling.
gamlss.mx
A GAMLSS add on package for fitting mixtute distributions
gamlss.nl
Fitting non linear parametric GAMLSS models
gamlss.tr
Generating and fitting truncated (gamlss.family) distributions
gamlss
Generalized Additive Models for Location Scale and Shape.
gap
Genetic analysis package
gbev
Gradient Boosted Regression Trees with Errors-in-Variables
gbm
Generalized Boosted Regression Models
gcl
Compute a fuzzy rules or tree classifier from data
gclus
Clustering Graphics
gcmrec
General class of models for recurrent event data
gdata
Various R programming tools for data manipulation
GDD
GD device for creating bitmap graphics as jpeg, png or gif files using gd library
gee
Generalized Estimation Equation solver
geepack
Generalized Estimating Equation Package
geiger
Analysis of evolutionary diversification
GenABEL
genome-wide SNP association analysis
genalg
R Based Genetic Algorithm
GeneCycle
Identification of Periodically Expressed Genes
GeneF
Package for Generalized F-statistics
Geneland
Simulation and MCMC inference in landscape genetics
GeneNet
Modeling and Inferring Gene Networks
GeneNT
Relevance or Dependency network and signaling pathway discovery
genetics
Population Genetics
GeneTS
Microarray Time Series and Network Analysis
GenKern
Functions for generating and manipulating kernel density estimates
geometry
Mesh generation and surface tesselation
geoR
Analysis of geostatistical data
geoRglm
geoRglm - a package for generalised linear spatial models
GeoXp
Interactive exploratory spatial data analysis
ggm
Graphical Gaussian Models
ggplot2
An implementation of the Grammar of Graphics
ggplot
An implementation of the Grammar of Graphics in R
ghyp
A package on generalized hyperbolic distributions
GillespieSSA
Gillespie's Stochastic Simulation Algorithm (SSA)
giRaph
The giRaph package for graph representation in R
gld
Estimation and use of the generalised (Tukey) lambda distribution
GLDEX
Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Discretised and Maximum Likelihood Methods
gllm
Generalised log-linear model
glmc
Fitting Generalized Linear Models Subject to Constraints
glmmAK
Generalized Linear Mixed Models
glmmML
Generalized linear models with clustering
glmpath
L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
glpk
GNU Linear Programming Kit
gmodels
Various R programming tools for model fitting
gmp
Multiple Precision Arithmetic
gmt
Interface between GMT map-making software and R
gmvalid
Validation of graphical models
gnm
Generalized Nonlinear Models
gnomeGUI
GNOME Console for R
GOSim
Computation of functional similarities between GO terms and gene products
GPArotation
GPA Factor Rotation
gpclib
General Polygon Clipping Library for R
gplots
Various R programming tools for plotting data
gpls
Classification using generalized partial least squares
granova
Graphical Analysis of Variance
graph
graph: A package to handle graph data structures
grasp
Generalized Regression Analysis and Spatial Prediction for R
GRASS
Interface between GRASS 5.0 geographical information system and R
gRbase
A package for graphical modelling in R
gRcox
Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
gregmisc
Greg's Miscellaneous Functions
gridBase
Integration of base and grid graphics
grImport
Importing Vector Graphics
grnnR
A Generalized Regression Neural Network
grouped
Regression Analysis of Grouped and Coarse Data
GroupSeq
Performing computations related to group sequential designs.
grplasso
Fitting user specified models with Group Lasso penalty
GSA
Gene set analysis
gsl
wrapper for the Gnu Scientific Library
GSM
Gamma Shape Mixture
gss
General Smoothing Splines
gstat
geostatistical modelling, prediction and simulation
gsubfn
Utilities for strings and function arguments.
gtkDevice
Loadable and embeddable gtk device driver for R
gtools
Various R programming tools
gvlma
Global Validation of Linear Models Assumptions
gWidgets
gWidgets API for building toolkit-independent, interactive GUIs
gWidgetsRGtk2
Toolkit implementation of gWidgets for RGtk2
gWidgetsrJava
Toolkit implementation of gWidgets for rJava
gWidgetstcltk
Toolkit implementation of gWidgets for tcltk pacakge
hapassoc
Likelihood inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm
haplo.ccs
Estimate Haplotype Relative Risks in Case-Control Data
haplo.stats
Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
hapsim
Haplotype Data Simulation
HardyWeinberg
Graphical tests for Hardy-Weinberg equilibrium
hbim
Hill/Bliss Independence Model for Combination Vaccines
hddplot
Use known groups in high-dimensional data to derive scores for plots
hdeco
Hierarchical DECOmposition of Entropy for Categorical Map Comparisons
hdf5
HDF5
hdrcde
Highest density regions and conditional density estimation
heatmap.plus
Heatmap with more sensible behavior.
heplots
Visualizing Tests in Multivariate Linear Models
hett
Heteroscedastic t regression
hexView
Viewing Binary Files
HFWutils
excel connections, garbage collection,string matching and passing by reference
HH
Statistical Analysis and Data Display: Heiberger and Holland
HI
Simulation from distributions supported by nested hyperplanes
HiddenMarkov
Hidden Markov Models
hier.part
Hierarchical Partitioning
hierfstat
Estimation and tests of hierarchical F-statistics
HighProbability
HighProbability estimates which alternative hypotheses have frequentist or Bayesian probabilities at least as great as a specified threshold, given a list of p-values.
hints
Provide hints on what to do next
Hmisc
Harrell Miscellaneous
hmm.discnp
Hidden Markov models with discrete non-parametric observation distributions.
hoa
Bundle of cond, marg, nlreg, csampling
homals
Homogeneity Analysis
homtest
Homogeneity tests for Regional Frequency Analysis
hopach
Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
hot
Computation on micro-arrays
howmany
A lower bound for the number of correct rejections
HSAUR
A Handbook of Statistical Analyses Using R
HTMLapplets
Dynamic visualisation in HTML documents
httpRequest
Basic HTTP Request
hwde
Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci.
hybridHclust
Hybrid hierarchical clustering
HydroMe
Estimation of Soil Hydraulic Parameters from Experimental Data
hydrosanity
Graphical user interface for exploring hydrological time series
HyperbolicDist
The hyperbolic distribution
ibdreg
Regression Methods for IBD Linkage With Covariates
ICE
Iterated Conditional Expectation
ICEinfer
Incremental Cost-Effectiveness (ICE) Statistical Inference (from Two Unbiased Samples)
Icens
NPMLE for Censored and Truncated Data
ICS
ICS / ICA Computation Based on two Scatter Matrices
ICSNP
Tools for Multivariate Nonparametrics
identity
Jacquard Condensed Coefficients of Identity
IDPmisc
Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch)
ifa
Independent Factor Analysis
ifs
Iterated Function Systems
ifultools
Insightful Research Tools
ig
Package for the robust and classical versions of the inverse Gaussian distribution
igraph
Routines for simple graphs, network analysis.
iid.test
iid-test
impute
impute: Imputation for microarray data
ineq
Measuring inequality, concentration and poverty
inetwork
Network Analysis and Plotting
inline
Inline C, C++, Fortran function calls from R
intcox
Iterated Convex Minorant Algorithm for interval censored event data
iplots
iPlots - interactive graphics for R
ipred
Improved Predictors
IPSUR
Introduction to Probability and Statistics Using R
irr
Various Coefficients of Interrater Reliability and Agreement
irtoys
Simple interface to the estimation and plotting of IRT models
ismev
An Introduction to Statistical Modeling of Extreme Values
ISwR
Introductory Statistics with R
its
Irregular Time Series
JADE
JADE and ICA performance criteria
JavaGD
Java Graphics Device
JGR
JGR - Java Gui for R
JLLprod
Nonparametric Estimation of Homothetic and Generalized Homothetic Production Functions
JointGLM
Joint Modelling of Mean and Dispersion (outdated, see package JointModeling)
JointModeling
Joint Modelling of Mean and Dispersion
JudgeIt
JudgeIt
kappalab
Non-additive measure and integral manipulation functions
Kendall
Kendall rank correlation and Mann-Kendall trend test
kernelPop
Spatially explicit population genetic simulations
kernlab
Kernel Methods Lab
KernSmooth
Functions for kernel smoothing for Wand & Jones (1995)
kin.cohort
Analysis of kin-cohort studies
kinship
mixed-effects Cox models, sparse matrices, and modeling data from large pedigrees
kknn
Weighted k-Nearest Neighbors
klaR
Classification and visualization
klin
Linear equations with Kronecker structure
km.ci
Confidence intervals for the Kaplan-Meier estimator
KMsurv
Data sets from Klein and Moeschberger (1997), Survival Analysis
knncat
Nearest-neighbor classification with categorical variables
knnFinder
Fast Near Neighbour Search
knnflex
A more flexible KNN
knnTree
k-nn classification with variable selection inside leaves of a tree
kohonen
Supervised and unsupervised self-organising maps
ks
Kernel smoothing
kza
Kolmogorov-Zurbenko Adaptive Filter for Image Detection
kzft
Kolmogorov-Zurbenko Fourier Transform and Applications
kzs
Kolmogorov-Zurbenko Spline Smoothing and Applications
labdsv
Laboratory for Dynamic Synthetic Vegephenomenology
labstatR
Libreria del Laboratorio di Statistica con R
lancet.iraqmortality
Surveys of Iraq Mortality Published in The Lancet
languageR
Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics".
lars
Least Angle Regression, Lasso and Forward Stagewise
laser
Likelihood Analysis of Speciation/Extinction Rates from Phylogenies
lasso2
L1 constrained estimation aka 'lasso'
latentnet
Latent position and cluster models for statistical networks
lattice
Lattice Graphics
latticeExtra
Extra Graphical Utilities Based on Lattice
lawstat
A R package for biostatistics, public policy and law
lazy
Lazy Learning for Local Regression
ldbounds
Lan-DeMets Method for Group Sequential Boundaries
ldDesign
Design of experiments for detection of linkage disequilibrium
LDheatmap
Graphical display of pairwise linkage disequilibria between SNPs
leaps
regression subset selection
LearnBayes
Functions for Learning Bayesian Inference
lga
Tools for linear grouping analysis (LGA)
lgtdl
A set of methods for longitudinal data objects.
lhs
Latin Hypercube Samples
linprog
Linear Programming / Optimization
ljr
Logistic Joinpoint Regression
LLAhclust
Hierarchical clustering of variables or objects based on the likelihood linkage analysis method
LLN
Learning with latent networks
lme4
Linear mixed-effects models using S4 classes
lmeSplines
lmeSplines
LMGene
LMGene Software for Date Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays
lmm
Linear mixed models
lmomco
L-moments, Trimmed L-moments, L-comoments, and Many Distributions
Lmoments
L-moments and quantile mixtures
lmtest
Testing Linear Regression Models
locfdr
Computes local false discovery rates
locfit
Local Regression, Likelihood and Density Estimation.
lodplot
Plot a genome scan
LogConcDEAD
Maximum likelihood estimation of a log-concave density
logcondens
Estimate a Log-Concave Probability Density from iid Observations
LogicReg
Logic Regression
logilasso
Analysis of sparse contingency tables with penalization approaches
logistf
Firth's bias reduced logistic regression
logspline
Logspline density estimation routines
lokern
Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
longitudinal
Analysis of Multiple Time Course Data
longmemo
Statistics for Long-Memory Processes (Jan Beran) -- Data and Functions
LoopAnalyst
A collection of tools to conduct Levins' Loop Analysis
LowRankQP
Low Rank Quadratic Programming
lpridge
Local Polynomial (Ridge) Regression
lpSolve
Interface to Lp_solve v. 5.5 to solve linear/integer programs
lsa
Latent Semantic Analysis
lspls
LS-PLS Models
lss
the accelerated failure time model to right censored data based on least-squares principle
ltm
Latent Trait Models under IRT
luca
Likelihood inference from case-control data Under Covariate Assumptions (LUCA)
lvplot
Level value plots for R
maanova
Tools for analyzing Micro Array experiments
magic
create and investigate magic squares
mapdata
Extra Map Databases
mapLD
Linkage Disequilibrium Mapping
mapproj
Map Projections
maps
Draw Geographical Maps
maptools
Tools for reading and handling spatial objects
maptree
Mapping, pruning, and graphing tree models
mAr
Multivariate AutoRegressive analysis
MarkedPointProcess
Analysis of Marks of Marked Point Processes
MasterBayes
ML and MCMC Methods for Pedigree Reconstruction and Analysis
Matching
Multivariate and Propensity Score Matching with Balance Optimization
MatchIt
MatchIt
mathgraph
Directed and undirected graphs
matlab
MATLAB emulation package
Matrix
A Matrix package for R
matrixcalc
Collection of functions for matrix differential calculus
maxstat
Maximally Selected Rank Statistics
MBA
Multilevel B-spline Approximation
MBESS
Methods for the Behavioral, Educational, and Social Sciences
mblm
Median-Based Linear Models
mboost
Model-Based Boosting
mcgibbsit
Warnes and Raftery's MCGibbsit MCMC diagnostic
MChtest
Monte Carlo hypothesis tests with Sequential Stopping
mclust02
Model-based cluster analysis (older version)
mclust
Model-Based Clustering / Normal Mixture Modeling
mcmc
Markov Chain Monte Carlo
MCMCpack
Markov chain Monte Carlo (MCMC) Package
mda
Mixture and flexible discriminant analysis
meboot
Maximum Entropy Bootstrap for Time Series
mefa
Faunistic count data handling and reporting
meifly
Interactive model exploration using GGobi
memisc
Tools for Data Management, Simulation, and Presentation of Estimates.
MEMSS
Data sets from Mixed-effects Models in S
merror
Accuracy and Precision of Measurements
meta
Meta-Analysis
MFDA
Model Based Functional Data Analysis
mFilter
Miscellaneous time series filters
mfp
Multivariable Fractional Polynomials
mgcv
GAMs with GCV smoothness estimation and GAMMs by REML/PQL
mice
Multivariate Imputation by Chained Equations
micEcon
Microeconomics
mimR
A package for graphical modelling in R
minpack.lm
R interface for MINPACK least squares optimization library
misc3d
Miscellaneous 3D Plots
MiscPsycho
Miscellaneous Psychometrics
mitools
Tools for multiple imputation of missing data
mix
Estimation/multiple Imputation for Mixed Categorical and Continuous Data
mixPHM
Mixtures of proportional hazard models.
mixreg
Functions to fit mixtures of regressions.
mixstock
functions for mixed stock analysis
mixtools
Tools for mixture models.
MKLE
Maximum kernel likelihood estimation.
mlbench
Machine Learning Benchmark Problems
mlCopulaSelection
Copula selection and fitting using maximum likelihood
MLDS
Maximum Likelihood Difference Scaling
MLEcens
Computation of the MLE for bivariate (interval) censored data
mlegp
Maximum Likelihood Estimates of Gaussian Processes
mlica
Independent Component Analysis using Maximum Likelihood
mlmmm
ML estimation under multivariate linear mixed models with missing values
mlmRev
Examples from Multilevel Modelling Software Review
mmlcr
Mixed-Mode Latent Class Regression
mnormt
The multivariate normal and t distributions
MNP
R Package for Fitting the Multinomial Probit Model
moc
GENERAL NONLINEAR MIXTURES OF CURVES
modeest
Mode Estimation -- Chernoff Distribution
modehunt
Multiscale Analysis for Density Functions
modeltools
Tools and Classes for Statistical Models
mokken
Mokken Scale Analysis in R
moments
Moments, cumulants, skewness, kurtosis and related tests
monomvn
Estimation for multivariate normal data with monotone missingness
monoProc
strictly monotone smoothing procedure
monreg
Nonparametric monotone regression
mota
Mean Optimal Transformation Approach
mprobit
Multivariate probit model for binary/ordinal response
MPV
Data Sets from Montgomery, Peck and Vining's Book
mra
Analysis of Capture-Recapture data
mratios
Inferences for ratios of coefficients in the general linear model
MSBVAR
Markov-Switching Bayesian Vector Autoregression Models
msm
Multi-state Markov and hidden Markov models in continuous time
muhaz
Hazard Function Estimation in Survival Analysis
multcomp
Simultaneous Inference for General Linear Hypotheses
multcompView
Visualizations of Paired Comparisons
multic
Quantitative linkage analysis tools using the variance components approach
multilevel
Multilevel Functions
multinomRob
Robust Estimation of Overdispersed Multinomial Regression Models
multtest
Resampling-based multiple hypothesis testing
muS2RC
Splus to R Compatibility for package muStat
mvbutils
MVB's utilities for R
mvnmle
ML estimation for multivariate normal data with missing values.
mvnormtest
Normality test for multivariate variables
mvoutlier
Multivariate outlier detection based on robust methods
mvpart
Multivariate partitioning
mvtnorm
Multivariate Normal and T Distribution
mvtnormpcs
Multivariate Normal and T Distribution functions of (Dunnett, 1989)
NADA
Nondetects And Data Analysis for environmental data
ncdf
Interface to Unidata netCDF data files
ncomplete
ncomplete
ncvar
High-level R Interface to NetCDF Datasets
negenes
Estimating the number of essential genes in a genome
NestedCohort
Survival Analysis for Cohorts with Missing Covariate Information
network
Classes for Relational Data
neural
Neural Networks
nFactors
Non Graphical Solution to the Cattell Scree Test
nFDR
Nonparametric Estimate of FDR Based on Bernstein Polynomials
nice
Get or Set UNIX Niceness
NISTnls
Nonlinear least squares examples from NIST
nlme
Linear and Nonlinear Mixed Effects Models
nlmeODE
Non-linear mixed-effects modelling in nlme using differential equations
nlstools
Tools for nonlinear regression diagnostics
nltm
Non-linear Transformation Models
NMMAPSlite
NMMAPS Data Lite
nnls
The Lawson-Hanson NNLS algorithm for non-negative least squares
nonbinROC
ROC-type analysis for non-binary gold standards
nor1mix
Normal (1-d) Mixture Models (S3 Classes and Methods)
norm
Analysis of multivariate normal datasets with missing values
normalp
Package for exponential power distributions (EPD)
NORMT3
Evaluates complex erf, erfc and density of sum of Gaussian and Student's t
nortest
Tests for Normality
noverlap
ncomplete
np
Nonparametric kernel smoothing methods for mixed datatypes
npmc
Nonparametric Multiple Comparisons
npmlreg
Nonparametric maximum likelihood estimation for random effect models
NRAIA
Data sets from "Nonlinear Regression Analysis and Its Applications"
nsRFA
Non-supervised Regional Frequency Analysis
numDeriv
Accurate Numerical Derivatives
nws
R functions for NetWorkSpaces and Sleigh
Oarray
Arrays with arbitrary offsets
oc
OC Roll Call Analysis Software.
oce
Analysis of Oceanographic data
odesolve
Solvers for Ordinary Differential Equations
odfWeave
Sweave processing of Open Document Format (ODF) files
onion
octonions and quaternions
optmatch
Functions for optimal matching
orientlib
Support for orientation data
ORMDR
ORMDR
orthopolynom
Collection of functions for orthogonal and orthonormal polynomials
ouch
Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
outliers
Tests for outliers
oz
Plot the Australian coastline and states
pairwiseCI
Confidence intervals for two sample comparisons
paleoTS
Modeling evolution in paleontological time-series
paleoTSalt
Modeling evolution in paleontological time-series (alternate paramaterization)
pamr
Pam: prediction analysis for microarrays
pan
Multiple imputation for multivariate panel or clustered data
panel
Panel
papply
Parallel apply function using MPI
paran
Horn's Test of Principal Components/Factors
pARtial
pARtial package
partitions
Additive partitions of integers
partsm
Periodic Autoregressive Time Series Models
party
A Laboratory for Recursive Partytioning
pastecs
Package for Analysis of Space-Time Ecological Series
pbatR
P2BAT
PBSmapping
PBS Mapping 2.54
PBSmodelling
PBS Modelling
pcalg
Estimating the skeleton and equivalence class of a DAG
pcaPP
Robust PCA by Projection Pursuit
pcse
Panel-Corrected Standard Error Estimation in R
pcurve
Principal Curve analysis
pear
Package for Periodic Autoregression Analysis
PearsonICA
Independent component analysis using score functions from the Pearson system
penalized
L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model
PerformanceAnalytics
Econometric tools for performance and risk analysis.
permax
permax
permtest
Permutation test to compare variability within and distance between two groups
perturb
Tools for evaluating collinearity
PET
Simulation and Reconstruction of PET Images
pgam
Poisson-Gamma Additive Models.
pgirmess
Data analysis in ecology
pheno
Auxiliary functions for phenological data analysis
phpSerialize
Serialize R to PHP associative array
PHYLOGR
Functions for phylogenetically based statistical analyses
PhySim
Phylogenetic Tree Simulation Package
pinktoe
Graphically traverse a tree via GUI widgets or web based system
pixmap
Bitmap Images ("Pixel Maps")
PK
Basic Pharmacokinetics
PKfit
A Data Analysis Tool for Pharmacokinetics
PKtools
unified computational interfaces for population PK
plink
IRT Separate Calibration Linking Methods
plm
Linear models for panel data
plotAndPlayGTK
A GUI for interactive plots using GTK+
plotrix
Various plotting functions
plRasch
Log Linear by Linear Asscociation models
pls
Partial Least Squares Regression (PLSR) and Principal Component Regression (PCR)
plsgenomics
PLS analyses for genomics
plugdensity
Plug-in Kernel Density Estimation
pmg
Poor Man's GUI
pmml
Generate PMML for various models
poLCA
Polytomous variable Latent Class Analysis
polspline
Polynomial spline routines
polyapost
Simulating from the Polya posterior
polycor
Polychoric and Polyserial Correlations
polynom
A collection of functions to implement a class for univariate polynomial manipulations
pomp
Partially-observed Markov processes
popbio
Construction and analysis of matrix population models
popgen
Statistical and Population Genetics
poplab
Population Lab
portfolio
Analysing equity portfolios
portfolioSim
Framework for simulating equity portfolio strategies
POT
Generalized Pareto Distribution and Peaks Over Threshold
powell
Powell's UObyQA algorithm
powerpkg
Power analyses for the affected sib pair and the TDT design
ppc
Peak Probability Contrasts
ppls
Penalized Partial Least Squares
pps
Functions for PPS sampling
prabclus
Functions for clustering of presence-absence and abundance data
predbayescor
Classification rule based on Bayesian naive Bayes models with feature selection bias corrected
predmixcor
Classification rule based on Bayesian mixture models with feature selection bias corrected
PresenceAbsence
Presence-Absence Model Evaluation
prettyR
Pretty descriptive stats.
prim
Patient Rule Induction Method (PRIM)
princurve
Fits a Principal Curve in Arbitrary Dimension
ProbeR
Reliability for gene expression from Affymetrix chip
ProbForecastGOP
Probabilistic Weather Field Forecast using the GOP method
ProfessR
Grades Setting and Exam Maker
proftools
Profile Output Processing Tools for R
proj4
A simple interface to the PROJ.4 cartographic projections library
proptest
Tests of the Proportional Hazards Assumption
proto
Prototype object-based programming
proxy
Distance and Similarity Measures
PSAgraphics
Propensity Score Analysis Graphics
pscl
Political Science Computational Laboratory, Stanford University
pseudo
Pseudo - observations
pspline
Penalized Smoothing Splines
psy
Various procedures used in psychometry
psych
Procedures for Personality and Psychological Research
psychometric
Applied Psychometric Theory
psyphy
Functions for analyzing psychophysical data in R
PTAk
Principal Tensor Analysis on k modes
pvclust
Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
pwr
Basic functions for power analysis
QCA
Qualitative Comparative Analysis
QCAGUI
QCA Graphical User Interface
qcc
Quality Control Charts
qgen
Quantitative Genetics using R
qp
q-order partial correlation graph search algorithm
QRMlib
Provides R-language code to examine Quantitative Risk Management concepts
qtl
Tools for analyzing QTL experiments
qtlbim
QTL Bayesian Interval Mapping
qtlDesign
Design of QTL experiments
quadprog
Functions to solve Quadratic Programming Problems.
qualV
Qualitative Validation Methods
quantchem
Quantitative chemical analysis: calibration and evaluation of results
quantmod
Quantitative Financial Modelling Framework
quantreg
Quantile Regression
quantregForest
Quantile Regression Forests
qvalue
Q-value estimation for false discovery rate control
qvcalc
Quasi variances for factor effects in statistical models
R.cache
Fast and light-weight caching of objects
R.huge
Methods for accessing huge amounts of data
R.matlab
Read and write of MAT files together with R-to-Matlab connectivity
R.oo
R object-oriented programming with or without references
R.rsp
R Server Pages
R.utils
Various programming utilities
R2HTML
HTML exportation for R objects
R2WinBUGS
Running WinBUGS and OpenBUGS from R / S-PLUS
race
Racing methods for the selection of the best
RadioSonde
Tools for plotting skew-T diagrams and wind profiles
rake
Normalize sample weights using marginal total population weights.
ramps
Bayesian Geostatistical Modeling with RAMPS
randaes
Random number generator based on AES cipher
random
True random numbers using random.org
RandomFields
Simulation and Analysis of Random Fields
randomForest
Breiman and Cutler's random forests for classification and regression
randomSurvivalForest
Ishwaran and Kogalur's Random Survival Forest
RandVar
Implementation of random variables
rankreg
Rank regression for censored data AFT model.
RArcInfo
Functions to import data from Arc/Info V7.x binary coverages
RaschSampler
Rasch Sampler
rateratio.test
Exact rate ratio test
rattle
A graphical user interface for data mining in R using GTK
RBGL
Interface to boost C++ graph lib
RBloomberg
R/Bloomberg
rbugs
Fusing R and OpenBugs
Rcapture
Loglinear Models in Capture-Recapture Experiments
rcdd
rcdd (C Double Description for R)
rcdk
rcdk - Interface to the CDK Libraries
Rcmdr
R Commander
RcmdrPlugin.HH
Rcmdr support for the HH package
RcmdrPlugin.TeachingDemos
Rcmdr Teaching Demos Plug-In
RColorBrewer
ColorBrewer palettes
rcom
R COM Client Interface and internal COM Server
rcompgen
Completion generator for R
rda
Shrunken Centroids Regularized Discriminant Analysis
RDieHarder
R interface to the dieharder RNG test suite
realized
Realized
ref
References for R
regress
Gaussian linear models with linear covariance structure
regsubseq
Detect and Test Regular Sequences and Subsequences
regtest
Regression testing
relaimpo
Relative importance of regressors in linear models
relations
Data Structures and Algorithms for Relations
relax
relax -- R Editor for Literate Analysis and lateX
relaxo
Relaxed Lasso
reldist
Relative Distribution Methods
Reliability
Functions for estimating parameters in software reliability models
relimp
Relative Contribution of Effects in a Regression Model
relsurv
Relative survival regression
reshape
Flexibly reshape data.
ResistorArray
electrical properties of resistor networks
resper
Sampling from restricted permutations
reweight
Adjustment of Survey Respondent Weights
RFA
Regional Frequency Analysis
RFOC
Graphics for Spherical Distributions and Earthquake Focal Mechanisms
Rfwdmv
Forward Search for Multivariate Data
rgcvpack
R Interface for GCVPACK Fortran Package
rgdal
Bindings for the Geospatial Data Abstraction Library
rgenoud
R version of GENetic Optimization Using Derivatives
rggm
Robustified methods for Gaussian Graphical Models
rggobi
Interface between R and GGobi
rgl
3D visualization device system (OpenGL)
rgr
The GSC Applied Geochemistry EDA Package
RGrace
RGrace
RGraphics
Data and Functions from the book R Graphics
RGtk2
R bindings for Gtk 2.8.0 and above
RHmm
Hidden Markov Models simulations and estimations
rhosp
Side effect risks in hospital : simulation and estimation
RiboSort
Classification and Analysis Package for Microbial Community Profiles
Rigroup
Rigroup: Provides small integer group functions
RII
Relative index of inequality estimation
rimage
Image Processing Module for R
rindex
Indexing for R
riv
Robust instrumental variables estimator
RJaCGH
Reversible Jump MCMC for the analysis of CGH arrays.
rjacobi
rjacobi
rJava
Low-level R to Java interface
RJDBC
Provides access to databases through the JDBC interface
rjson
JSON for R
Rlab
Functions and Datasets Required for ST370 class
RLadyBug
Analysis of infectious diseases using stochastic epidemic models
rlecuyer
R interface to RNG with multiple streams
RLMM
A Genotype Calling Algorithm for Affymetrix SNP Arrays
RLRsim
Exact (Restricted) Likelihood Ratio tests for mixed and additive models.
Rlsf
Interface to the LSF Queuing System
Rmdr
R-Multifactor Dimensionality Reduction
rmeta
Meta-analysis
rmetasim
An individual-based population genetic simulation environment
Rmetrics
Rmetrics - Financial Engineering and Computational Finance
Rmpi
Interface (Wrapper) to MPI (Message-Passing Interface)
RMySQL
R interface to the MySQL database
RNetCDF
R Interface to NetCDF Datasets
RobLox
Optimally robust influence curves for location and scale
RobRex
Optimally robust influence curves for regression and scale
robust
Insightful Robust Library
robustbase
Basic Robust Statistics
ROCR
Visualizing the performance of scoring classifiers.
RODBC
ODBC Database Access
ROptEst
Optimally robust estimation
ROptRegTS
Optimally robust estimation for regression-type models
ROracle
Oracle database interface for R
Rpad
Workbook-style, web-based interface to R
rpanel
Simple interactive controls for R using the tcltk library.
rpart.permutation
Permutation testing of rpart models
rpart
Recursive Partitioning
RPMG
Graphical User Interface (GUI) for interactive R analysis sessions
rpubchem
rpubchem - Interface to the PubChem Collection
rpvm
R interface to PVM (Parallel Virtual Machine)
RPyGeo
ArcGIS Geoprocessing in R via Python
rqmcmb2
Markov Chain Marginal Bootstrap for Quantile Regression
RQuantLib
R interface to the QuantLib library
rrcov
Scalable Robust Estimators with High Breakdown Point
rrp
Random Recursive Partitioning
Rsac
Seismic analysis tools in R
RSAGA
SAGA Geoprocessing and Terrain Analysis in R
rsbml
R support for SBML, using libsbml
RScaLAPACK
A seamless interface to perform parallel computation on linear algebra problems using the ScaLAPACK library.
Rserve
Binary R server
rsprng
R interface to SPRNG (Scalable Parallel Random Number Generators)
RSQLite
SQLite interface for R
rstream
Streams of random numbers
RSvgDevice
An R SVG graphics device.
RSVGTipsDevice
An R SVG graphics device with dynamic tips and hyperlinks
rtiff
A tiff reader for R.
RTisean
R interface to Tisean algorithms
RUnit
R Unit test framework
Runuran
R interface to the UNU.RAN random variate generators
rv
Simulation-based random variable object class in R
Rvelslant
Downhole Seismic Analysis in R
Rwave
Time-Frequency analysis of 1-D signals
RWeka
R/Weka interface
RWinEdt
R-WinEdt
rwt
Rice Wavelet Toolbox wrapper
RXshrink
Maximum Likelihood Shrinkage via Ridge or Least Angle Regression
Ryacas
R interface to the yacas computer algebra system
sac
Semiparametric Analysis of Changepoint
sampfling
Sampford sampling (w/o replacement and unequal probabilities)
sampling
Survey Sampling
samr
SAM: Significance Analysis of Microarrays
sandwich
Robust Covariance Matrix Estimators
sapa
Insightful Spectral Analysis for Physical Applications
SASmixed
Data sets from "SAS System for Mixed Models"
SASxport
Read and Write SAS XPORT Files
sbgcop
Semiparametric Bayesian Gaussian copula estimation
sca
Simple Component Analysis
scagnostics
Compute scagnostics.
scaleboot
Approximately Unbiased P-values via Multiscale Bootstrap
scape
Statistical catch-at-age plotting environment
scapeMCMC
MCMC diagnostic plots
scatterplot3d
3D Scatter Plot
schoolmath
Functions and datasets for math used in school
sciplot
Scientific Graphing Functions for Factorial Designs
SciViews
Bundle of svMisc, svIO, svViews, svDialogs, svSocket, svGUI, svIDE, svWidgets
scope
Data Manipulation Using Arbitrary Row and Column Criteria
scuba
Scuba diving calculations and decompression models
sdcMicro
Statistical Disclosure Control methods for the generation of public- and scientific-use files.
sde
Simulation and Inference for Stochastic Differential Equations
seacarb
Calculates parameters of the seawater carbonate system
seas
Seasonal analysis and graphics, especially for climatology
seewave
Time wave analysis and graphical representation
segmented
Segmented relationships in regression models
sem
Structural Equation Models
SemiPar
Semiparametic Regression
sendplot
Tool for sending interactive plots
sensitivity
Sensitivity Analysis
SensoMineR
Sensory data analysis with R
SenSrivastava
Datasets from Sen & Srivastava
seqinr
Biological Sequences Retrieval and Analysis
SeqKnn
Sequential KNN imputation method
seqmon
Sequential Monitoring of Clinical Trials
seriation
Infrastructure for seriation
session
Functions for interacting with, saving and restoring R sessions.
setRNG
Set (normal) random number generator and seed
sets
Sets and Generalized Sets
sfsmisc
Utilities from Seminar fuer Statistik ETH Zurich
sgeostat
An Object-oriented Framework for Geostatistical Modeling in S+
shapefiles
Read and Write ESRI Shapefiles
shapes
Statistical shape analysis
SharedHT2
Shared Hotelling T2 test for small sample microarray experiments
sigma2tools
Test of hypothesis about sigma2
signal
Signal processing
signalextraction
Real-Time Signal Extraction (Direct Filter Approach)
simba
A Collection of functions for similarity calculation of binary data
simco
A package to import Structure files and deduce similarity coefficients from them
simecol
Simulation of ecological (and other) dynamic systems
simex
SIMEX- and MCSIMEX-Algorithm for measurement error models
SimHap
A comprehensive modeling framework for epidemiological outcomes and a multiple-imputation approach to haplotypic analysis of population-based data
simpleboot
Simple Bootstrap Routines
SIN
A SINful Approach to Selection of Gaussian Graphical Markov Models
skewt
The Skewed Student-t Distribution
SLmisc
Miscellaneous Functions for analysis of gene expression data at SIRS-Lab GmbH
sm
Smoothing methods for nonparametric regression and density estimation
sma
Statistical Microarray Analysis
smatr
(Standardised) Major Axis Estimation and Testing Routines
smoothSurv
Survival Regression with Smoothed Error Distribution
smoothtail
Smooth Estimation of GPD Shape Parameter
SMPracticals
Practicals for use with Davison (2003) Statistical Models
sn
The skew-normal and skew-t distributions
sna
Tools for Social Network Analysis
snow
Simple Network of Workstations
Snowball
Snowball Stemmers
snowFT
Fault Tolerant Simple Network of Workstations
snp.plotter
snp.plotter
SNPassoc
SNPs-based whole genome association studies
SNPmaxsel
Maximally selected statistics for SNP data
snpXpert
Tools to analysis SNP data
som
Self-Organizing Map
SoPhy
Soil Physics Tools
sound
A Sound Interface for R
sp
classes and methods for spatial data
spam
SPArse Matrix
SparseLogReg
Sparse logistic regression
SparseM
Sparse Linear Algebra
spatclus
Arbitrarily Shaped Multiple Spatial Cluster Detection for Case Event Data.
spatgraphs
Graphs for spatial point patterns
spatialCovariance
Computation of spatial covariance matrices for data on rectangles
spatialkernel
Nonparameteric estimation of spatial segregation in a multivariate point process
SpatialNP
Multivariate nonparametric methods based on spatial signs and ranks
spatstat
Spatial Point Pattern analysis, model-fitting, simulation, tests
spBayes
Univariate and Multivariate Spatial Modeling
spc
Statistical Process Control
spdep
Spatial dependence: weighting schemes, statistics and models
spe
Stochastic Proximity Embedding
spectralGP
Approximate Gaussian processes using the Fourier basis
spectrino
Spectra organizer, visualization and data extraction
spgrass6
Interface between GRASS 6 geographical information system and R
spgwr
Geographically weighted regression
SpherWave
Spherical Wavelets and SW-based Spatially Adaptive Methods
splancs
Spatial and Space-Time Point Pattern Analysis
splus2R
Insightful package providing missing S-PLUS functionality in R
spsurvey
Spatial Survey Design and Analysis
sqldf
Perform SQL Selects on R Data Frames
SQLiteDF
Stores data frames & matrices in SQLite tables
SRPM
Shared Reproducibility Package Management
ssanv
Sample Size Adjusted for Nonadherence or Variability of input parameters
sspir
State Space Models in R
sspline
Smoothing Splines on the Sphere
st
Shrinkage t Statistic
staRt
Inferenza classica con TI-83 Plus
startupmsg
Utilities for start-up messages
stashR
A Set of Tools for Administering SHared Repositories
StatDA
Statistical Analysis for Environmental Data
StatDataML
Read and write StatDataML files
statmod
Statistical Modeling
stepPlr
L2 penalized logistic regression with a stepwise variable selection
stepwise
Stepwise detection of recombination breakpoints
stinepack
Stineman, a consistently well behaved method of interpolation
stochasticGEM
R Package for Fitting Stochastic General Epidemic Models
stochmod
Stochastic Modeling
stream.net
Building and analyzing binary stream networks
strucchange
Testing, Monitoring and Dating Structural Changes
subselect
Selecting variable subsets
sudoku
Sudoku Puzzle Generator and Solver
supclust
Supervised Clustering of Genes
superpc
Supervised principal components
SuppDists
Supplementary distributions
surv2sample
Two-Sample Tests for Survival Analysis
survBayes
Fits a proportional hazards model to time to event data by a Bayesian approach
surveillance
Outbreak detection algorithms for surveillance data
survey
analysis of complex survey samples
surveyNG
experimental revision of survey package
survival
Survival analysis, including penalised likelihood.
survrec
Survival analysis for recurrent event data
svcm
2d and 3d Space-Varying Coefficient Models
svcR
svcR package
svmpath
svmpath: the SVM Path algorithm
SwissAir
Air Quality Data of Switzerland for one year in 30 min Resolution
Synth
Synthetic Control Group Method for Comparative Case Studies
systemfit
Simultaneous Equation Estimation Package
taskPR
Task-Parallel R Package
tcltk2
SciViews GUI API - More tcltk
tdist
Distribution of a linear combination of independent Student's t-variables
tdm
A Tool for Therapeutic Drug Monitoring (TDM)
TeachingDemos
Demonstrations for teaching and learning
tensor
Tensor product of arrays
tensorA
Advanced tensors arithmetic with named indices
termstrc
Term Structure and Credit Spread Estimation
tframe
Time Frame coding kernel
tgp
Bayesian treed Gaussian process models
time
Time tracking for developers
TIMP
a problem solving environment for fitting superposition models
timsac
TIMe Series Analysis and Control package
titan
Titration analysis for mass spectrometry data
titecrm
Time-to-event continual reassessment method and calibration tools
tkrgl
TK widget tools for rgl package
tkrplot
TK Rplot
tlnise
Two-level normal independent sampling estimation
tm
Text Mining Package
trackObjs
Track Objects
tradeCosts
Trade Cost Analysis
TRAMPR
TRFLP Analysis and Matching Package for R
tree
Classification and regression trees
treeglia
Stem-analysis on tree cross-sections
triangle
Provides the standard distribution functions for the triangle distribution
trimcluster
Cluster analysis with trimming
trip
Spatial analysis of animal track data
tripack
Triangulation of irregularly spaced data
tripEstimation
Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes
truncgof
GoF tests allowing for left truncated data
trust
Trust Region Optimization
TSdbi
Time Series Database Interface
tsDyn
Time series analysis based on dynamical systems theory
tseries
Time series analysis and computational finance
tseriesChaos
Analysis of nonlinear time series
tsfa
Time Series Factor Analysis
TSMySQL
Time Series Database Interface extensions for MySQL
TSP
Traveling Salesperson Problem (TSP)
TSpadi
TSdbi Interface to PADI Time Series Server (for e.g. Fame)
TSSQLite
Time Series Database Interface extentions for SQLite
TTR
Technical Trading Rules
tuneR
Analysis of music
tutoR
Student-friendly package to mask common functions, straight-to-the-point with examples for help, and deskcheck() for debugging User defined functions.
twang
Toolkit for Weighting and Analysis of Nonequivalent Groups
tweedie
Tweedie exponential family models
TWIX
Trees WIth eXtra splits
TwoWaySurvival
Additiv Two-Way Hazards Modelling of Right Censored Survival Data
twslm
A two-way semilinear model for normalization and analysis of cDNA microarray data.
TwslmSpikeWeight
Systematic approaches using TW-SLM for incorporating control spots and data quality information to improve normalization of cDNA microarray data.
udunits
interface to Unidata's routines to convert units
Umacs
Universal Markov chain sampler
ump
Uniformly Most Powerful Tests
unbalhaar
Function estimation via Unbalanced Haar wavelets
UNF
Tools for creating universal numeric fingerprints for data.
untb
ecological drift under the UNTB
urca
Unit root and cointegration tests for time series data
urn
Urn : Sampling Without Replacement
uroot
Unit Root Tests and Graphics for Seasonal Time Series
UsingR
Data sets for the text "Using R for Introductory Statistics"
USPS
Unsupervised and Supervised methods of Propensity Score Adjustment for Bias
vabayelMix
Variational Bayesian Mixture Modelling
VaR
Value at Risk estimation
vardiag
A package for variogram diagnostics
varmixt
Mixture model on the Variance for the analysis of gene expression data
vars
VAR Modelling
varSelRF
Variable selection using random forests
vbmp
Variational Bayesian Multinomial Probit Regression
vcd
Visualizing Categorical Data
VDCutil
utilities supporting the VDC system
vegan
Community Ecology Package
verification
Forecast verification utilities.
verify
Construction of test suites using verify objects
VGAM
Vector Generalized Linear and Additive Models
vioplot
Violin plot
VLMC
VLMC -- Variable Length Markov Chains
VR
Bundle of MASS, class, nnet, spatial
vrtest
Variance Ratio tests for Weak-form Market Efficiency
waved
Wavelet Deconvolution
wavelets
A package of funtions for computing wavelet filters, wavelet transforms and multiresolution analyses
waveslim
Basic wavelet routines for one-, two- and three-dimensional signal processing
wavethresh
Software to perform wavelet statistics and transforms.
wccsom
SOM networks for comparing patterns with peak shifts
WeedMap
Map of weed intensity
WhatIf
WhatIf: Software for Evaluating Counterfactuals
wikibooks
Functions and datasets of the german WikiBook "GNU R"
WilcoxCV
Wilcoxon-based variable selection in cross-validation
wle
Weighted Likelihood Estimation
wmtsa
Insightful Wavelet Methods for Time Series Analysis
wnominate
WNOMINATE Roll Call Analysis Software.
wombsoft
Wombling Computation
wordnet
WordNet Interface
write.snns
Function for exporting data to SNNS pattern files.
WWGbook
Functions and datasets for WWGbook.
xgobi
Interface to the XGobi and XGvis programs for graphical data analysis
xlsReadWrite
Natively read and write Excel files
XML
Tools for parsing and generating XML within R and S-Plus.
xtable
Export tables to LaTeX or HTML
yaImpute
yaImpute: An R Package for k-NN Imputation
YaleToolkit
Data exploration tools from Yale University.
yest
Gaussian Independence Models
Zelig
Everyone's Statistical Software
zicounts
Counts data models: zero-inflation as well as interval icensored
ZIGP
Zero Inflated Generalized Poisson (ZIGP) regression models
zipfR
Statistical models for word frequency distributions
zoeppritz
Zoeppritz Equations
zoo
Z's ordered observations
번역기 쓰면 정확하게 해석 안되는 거 알고 있어요- 대강의 뜻만 알면 되니까 부탁해요!
|
Mutual information for protein sequence alignments |
Combine multi-dimensional arrays | |
AcceptanceSampling | Creation and evaluation of Acceptance Sampling Plans |
accuracy | Tools for testing and improving accuracy of statistical results. |
acepack | ace() and avas() for selecting regression transformations |
actuar | Actuarial functions |
ada | Performs boosting algorithms for a binary response |
adabag | Applies Adaboost.M1 and Bagging |
ADaCGH | Analysis of data from aCGH experiments |
adapt | adapt -- multidimensional numerical integration |
AdaptFit | Adaptive Semiparametic Regression |
ade4 | Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences |
ade4TkGUI | ade4 Tcl/Tk Graphical User Interface |
adegenet | Genetic data handling for multivariate analysis using ade4 |
adehabitat | Analysis of habitat selection by animals |
adimpro | Adaptive Smoothing of Digital Images |
adlift | An adaptive lifting scheme algorithm |
ads | Spatial point patterns analysis |
agce | analysis of growth curve experiments |
agricolae | Statistical Procedures for Agricultural Research |
agsemisc | Miscellaneous plotting and utility functions |
AIS | Tools to look at the data ("Ad Inidicia Spectata") |
akima | Interpolation of irregularly spaced data |
AlgDesign | AlgDesign |
allelic | A fast, unbiased and exact allelic exact test |
alr3 | Methods and data to accompany Applied Linear Regression 3rd edition |
amap | Another Multidimensional Analysis Package |
Amelia | Amelia II: A Program for Missing Data |
AMORE | A MORE flexible neural network package |
analogue | Analogue methods for palaeoecology |
AnalyzeFMRI | Functions for analysis of fMRI datasets stored in the ANALYZE format. |
animation | Demonstrate Animations in Statistics |
anm | Analog model for downscaling |
aod | Analysis of Overdispersed Data |
ape | Analyses of Phylogenetics and Evolution |
aplpack | Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, ... |
apTreeshape | Analyses of Phylogenetic Treeshape |
ArDec | Time series autoregressive decomposition |
ARES | Allelic richness estimation, with extrapolation beyond the sample size |
argosfilter | Argos locations filter |
arm | Data Analysis Using Regression and Multilevel/Hierarchical Models |
arrayImpute | Missing imputation for microarray data |
arrayMissPattern | Exploratory analysis of Missing patterns for microarray data |
ars | Adaptive Rejection Sampling |
arules | Mining Association Rules and Frequent Itemsets |
arulesSequences | Mining frequent sequences |
ash | David Scott's ASH routines |
aspace | A collection of functions for estimating centrographic statistcs and computational geometries from spatial point patterns |
assist | A Suite of S-Plus Functions Implementing Smoothing Splines |
aster | Aster Models |
asuR | Advanced statistics using R |
asypow | Calculate Power Utilizing Asymptotic Likelihood Ratio Methods |
aws | Adaptive Weights Smoothing |
BACCO | Bundle of emulator, calibrator, approximator |
backtest | Exploring portfolio-based conjectures about financial instruments |
BARD | Better Automated ReDistricting |
bayescount | Bayesian analysis of count distributions with JAGS |
bayesm | Bayesian Inference for Marketing/Micro-econometrics |
bayesmix | Bayesian Mixture Models with JAGS |
bayesSurv | Bayesian Survival Regression with Flexible Error and Random Effects Distributions |
BayesTree | Bayesian Methods for Tree Based Models |
BayesValidate | BayesValidate Package |
BayHaz | R Functions for Bayesian Hazard Rate Estimation |
bbmle | Tools for general maximum likelihood estimation |
bcp | Bayesian Change Point |
benchden | 28 benchmark densities from Berlinet/Devroye (1994) |
betareg | Beta Regression. |
Bhat | General likelihood exploration |
BHH2 | Useful Functions for Box, Hunter and Hunter II |
BiasedUrn | Biased Urn model distributions |
bicreduc | Reduction algorithm for the NPMLE for the distribution function of bivariate interval-censored data |
biglm | bounded memory linear and generalized linear models |
bim | Bayesian Interval Mapping Diagnostics |
bindata | Generation of Artificial Binary Data |
binGroup | Evaluation and experimental design for binomial group testing |
binMto | Asymptotic simultaneous confdence intervals for many-to-one comparisons of proportions |
binom | Binomial Confidence Intervals For Several Parameterizations |
bio.infer | Compute biological inferences |
Biodem | Biodemography functions |
BiodiversityR | GUI for biodiversity and community ecology analysis |
biopara | Self-contained parallel system for R |
biOps | Basic image operations and image processing |
bitops | Functions for Bitwise operations |
bivpois | Bivariate Poisson Models Using The EM Algorithm |
blighty | United Kingdom coastlines |
blockrand | Randomization for block random clinical trials |
blockTools | Block, randomly assign, and diagnose potential problems between units in randomized experiments |
BMA | Bayesian Model Averaging |
bnlearn | Bayesian network structure learning |
boa | Bayesian Output Analysis Program (BOA) for MCMC |
Bolstad | Bolstad functions |
boolean | Boolean Binary Response Models |
boost | Boosting Methods for Real and Simulated Data |
boot | Bootstrap R (S-Plus) Functions (Canty) |
BootCL | Bootstrapping test for chromosomal localization |
bootStepAIC | Bootstrap stepAIC |
bootstrap | Functions for the Book "An Introduction to the Bootstrap" |
bqtl | Bayesian QTL mapping toolkit |
BradleyTerry | Bradley-Terry models |
brainwaver | Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory. |
brew | Templating Framework for Report Generation |
brlr | Bias-reduced logistic regression |
Brobdingnag | Very large numbers in R |
BRugs | OpenBUGS and its R / S-PLUS interface BRugs |
bs | Package for the Birnbaum-Saunders distribution |
BSDA | Basic Statistics and Data Analysis |
BsMD | Bayes Screening and Model Discrimination |
butler | Unit testing, profiling and benchmarking for R |
ca | Simple, Multiple and Joint Correspondence Analysis |
cacheSweave | Tools for caching Sweave computations |
Cairo | R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output. |
cairoDevice | Cairo-based cross-platform antialiased graphics device driver. |
calib | Statistical tool for calibration of plate based bioassays |
calibrate | Calibration of Biplot Axes |
caMassClass | Processing & Classification of Protein Mass Spectra (SELDI) Data |
car | Companion to Applied Regression |
CarbonEL | Carbon Event Loop |
caret | Classification and Regression Training |
caretLSF | Classification and Regression Training LSF Style |
caretNWS | Classification and Regression Training in Parallel Using NetworkSpaces |
cat | Analysis of categorical-variable datasets with missing values |
catmap | Case-control And Tdt Meta-Analysis Package |
caTools | Tools: moving window statistics, GIF, Base64, ROC AUC, etc. |
catspec | Special models for categorical variables |
cba | Clustering for Business Analytics |
CCA | Canonical correlation analysis |
cclust | Convex Clustering Methods and Clustering Indexes |
CDNmoney | Components of Canadian Monetary and Credit Aggregates |
celsius | Retrieve Affymetrix microarray measurements and metadata from Celsius |
cfa | Analysis of configuration frequencies (CFA) |
cggd | Continuous Generalized Gradient Descent |
cgh | Microarray CGH analysis using the Smith-Waterman algorithm |
cghFLasso | Detecting hot spot on CGH array data with fused lasso regression. |
CGIwithR | CGI Programming in R |
changeLOS | Change in LOS |
chemCal | Calibration functions for analytical chemistry |
choplump | Choplump tests |
chplot | Augmented Convex Hull Plots |
chron | Chronological objects which can handle dates and times |
CircStats | Circular Statistics, from "Topics in circular Statistics" (2001) |
circular | Circular Statistics |
clac | Clust Along Chromosomes, a method to call gains/losses in CGH array data |
classGraph | Construct Graph of S4 Class Hierarchies |
classifly | Explore classification models in high dimensions |
classInt | Choose univariate class intervals |
classPP | Projection Pursuit for supervised classification |
clim.pact | Climate analysis and empirical-statistical downscaling (ESD) package for monthly and daily data. |
climatol | Some Tools for Climatology |
clines | Calculates Contour Lines |
clinfun | Clinical Trial Design and Data Analysis Functions |
clue | Cluster ensembles |
cluster | Cluster Analysis Extended Rousseeuw et al. |
clusterfly | Explore clustering interactively using R and GGobi |
clusterGeneration | random cluster generation (with specified degree of separation) |
clusterRepro | Reproducibility of gene expression clusters |
clusterSim | Searching for optimal clustering procedure for a data set |
clustTool | GUI for clustering data with spatial information |
clustvarsel | Variable Selection for Model-Based Clustering |
clv | Cluster Validation Techniques |
clValid | Validation of Clustering Results |
cmprsk | Subdistribution Analysis of Competing Risks |
cobs99 | Constrained B-splines -- outdated 1999 version |
cobs | COBS -- Constrained B-splines (Sparse matrix based) |
CoCo | Bundle of CoCoGraph, CoCoObjects, CoCoCore, CoCoOldData, CoCoRaw, CoCo, CoCoCg |
cocorresp | Co-correspondence analysis ordination methods for community ecology |
coda | Output analysis and diagnostics for MCMC |
codetools | Code Analysis Tools for R |
coin | Conditional Inference Procedures in a Permutation Test Framework |
colorRamps | Builds color tables |
colorspace | Colorspace Manipulation |
combinat | combinatorics utilities |
ComPairWise | Compare phylogenetic or population genetic data alignments |
CompetingRiskFrailty | Competing Risk Model with Frailties for Right Censored Survival Data |
compositions | Compositional Data Analysis |
compOverlapCorr | Comparing overlapping correlation coefficients |
concor | Concordance |
concord | Concordance and reliability |
conf.design | Construction of factorial designs |
connectedness | Find disconnected subsets for a two-way classification |
contrast | A collection of contrast methods |
copula | Multivariate Dependence with Copula |
corpcor | Efficient Estimation of Covariance and (Partial) Correlation |
corpora | Statistics for corpus linguists |
CORREP | Multivariate Correlation Estimator and Statistical Inference Procedures. |
corrgram | Plot a correlogram |
covRobust | Robust Covariance Estimation via Nearest Neighbor Cleaning |
coxphf | Cox regression with Firth's penalized likelihood |
coxrobust | Robust Estimation in Cox Model |
CPGchron | Create radiocarbon-dated depth chronologies |
cramer | Multivariate nonparametric Cramer-Test for the two-sample-problem |
CreditMetrics | Functions for calculating the CreditMetrics risk model |
crossdes | Design and Randomization in Crossover Studies |
crosshybDetector | Detection of cross-hybridization events in microarray experiments |
crq | Censored Quantile Regression |
cslogistic | Conditionally Specified Logistic Regression |
CTFS | The CTFS Large Plot Forest Dynamics Analyses |
cts | Continuous Time Autoregressive Models |
ctv | CRAN Task Views |
CVThresh | Level-Dependent Cross-Validation Thresholding |
cwhmisc | Bundle of cwhmath, cwhstring, cwhplot, cwhprint, cwhstat, cwhtool |
cyclones | Cyclone identification |
DAAG | Data Analysis And Graphics |
DAAGbio | Data Sets and Functions, for demonstrations with expression arrays. |
DAAGxtras | Data Sets and Functions, supplementary to DAAG |
date | Functions for handling dates |
Davies | The Davies quantile function |
DBI | R Database Interface |
dblcens | Compute the NPMLE of distribution from doubly censored data |
DCluster | Functions for the detection of spatial clusters of diseases |
ddesolve | Solver for Delay Differential Equations |
DDHFm | Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays) |
deal | Learning Bayesian Networks with Mixed Variables |
debug | MVB's debugger for R |
Defaults | Create Global Function Defaults |
deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation. |
delt | Estimation of multivariate densities with adaptive histograms |
demogR | Analysis of age-structured demographic models |
denpro | Visualization of multivariate, functions, sets, and data |
DEoptim | Differential Evolution Optimization |
depmix | Dependent Mixture Models |
DescribeDisplay | R interface to DescribeDisplay (GGobi plugin) |
Design | Design Package |
desirability | Desirabiliy Function Optimization and Ranking |
Devore5 | Data sets from Devore's "Prob and Stat for Eng (5th ed)" |
Devore6 | Data sets from Devore's "Prob and Stat for Eng (6th ed)" |
Devore7 | Data sets from Devore's "Prob and Stat for Eng (7th ed)" |
dglm | Double generalized linear models |
diamonds | Analysis and sampling grids from diamond partitions |
dice | Calculate Probabilities of Various Dice-Rolling Events |
dichromat | Color schemes for dichromats |
DICOM | Import medical imaging data using the DICOM Standard |
digest | Create cryptographic hash digests of R objects |
diptest | Hartigan's dip test statistic for unimodality - corrected code |
dispmod | Dispersion models. |
distr | Object orientated implementation of distributions |
distrDoc | Documentation for packages distr, distrEx, distrSim, distrTEst |
distrEx | Extensions of package distr |
distributions | Probability distributions based on TI-83 Plus |
distrSim | Simulation classes based on package distr |
distrTEst | Estimation and Testing classes based on package distr |
diveMove | Dive analysis and calibration |
dlm | Functions for DLM Analysis |
doBy | Groupwise computations of summary statistics |
dplR | Dendrochronology Program Library in R |
DPpackage | Bayesian Nonparametric and Semiparametric Analysis |
dprep | Data preprocessing and visualization functions for classification |
dr | Methods for dimension reduction for regression |
drc | Analysis of dose-response curves |
drfit | Dose-response data evaluation |
drm | Regression and association models for repeated categorical data |
dse | Bundle of dse1, dse2 |
dtt | Discrete Trigonometric Transforms |
dyn | Time Series Regression |
dynamicGraph | dynamicGraph |
dynlm | Dynamic Linear Regression |
e1071 | Misc Functions of the Department of Statistics (e1071), TU Wien |
earth | Multivariate Adaptive Regression Spline Models |
eba | Elimination-By-Aspects (EBA) Models |
EbayesThresh | Empirical Bayes thresholding and related methods |
Ecdat | Data sets for econometrics |
ecespa | Functions for spatial point pattern analysis |
eco | R Package for Ecological Inference in 2x2 Tables |
ecodist | Dissimilarity-based functions for ecological analysis |
edci | Edge Detection and Clustering in Images |
effects | Effect Displays for Linear and Generalized Linear Models |
eha | Event History Analysis |
eigenmodel | Semiparametric factor and regression models for symmetric relational data |
eiPack | eiPack: Ecological Inference and Higher-Dimension Data Management |
elasticnet | Elastic Net Regularization and Variable Selection |
ElemStatLearn | Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman. |
ellipse | Functions for drawing ellipses and ellipse-like confidence regions |
elliptic | elliptic functions |
elrm | Exact Logistic Regression via MCMC |
emdbook | Ecological models and data (book support) |
emme2 | Read and Write to an EMME/2 databank |
emplik | Empirical likelihood ratio for censored/truncated data |
EMV | Estimation of Missing Values for a Data Matrix |
energy | E-statistics (energy statistics) tests of fit, independence, clustering |
ensembleBMA | Probabilistic Forecasting using Ensembles and Bayesian Model Averaging |
Epi | A package for statistical analysis in epidemiology. |
epibasix | Elementary Epidemiological Functions for a Graduate Epidemiology\Biostatistics Course |
epicalc | Epidemiological calculator |
epitools | Epidemiology Tools |
epsi | Edge Preserving Smoothing for Images |
equivalence | Provides tests and graphics for assessing tests of equivalence |
eRm | Extended Rasch Modeling. |
evd | Functions for extreme value distributions |
evdbayes | Bayesian Analysis in Extreme Value Theory |
evir | Extreme Values in R |
exactLoglinTest | Monte Carlo Exact Tests for Log-linear models |
exactmaxsel | Maximally selected statistics for binary response variables - Exact methods |
exactRankTests | Exact Distributions for Rank and Permutation Tests |
experiment | experiment: R package for designing and analyzing randomized experiments |
extRemes | Extreme value toolkit. |
FactoMineR | Factor Analysis and Data Mining with R |
Fahrmeir | Data from the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz |
fame | Interface for FAME time series database |
far | Modelization for Functional AutoRegressive processes |
faraway | Functions and datasets for books by Julian Faraway. |
fArma | Rmetrics - ARMA Time Series Modelling |
fAsianOptions | Rmetrics - EBM and Asian Option Valuation |
fAssets | Rmetrics - Assets Selection and Modelling |
fastICA | FastICA Algorithms to perform ICA and Projection Pursuit |
fBasics | Rmetrics - Markets and Basic Statistics |
fBonds | Rmetrics - Bonds and Interest Rate Models |
fCalendar | Rmetrics - Chronological and Calendarical Objects |
fCopulae | Rmetrics - Dependence Structures with Copulas |
fda | Functional Data Analysis |
fdim | Functions for calculating fractal dimension. |
fdrtool | Estimation and Control of (Local) False Discovery Rates |
feature | Feature significance for multivariate kernel density estimation |
fEcofin | Ecofin - Economic and Financial Data Sets |
femmeR | Output analysis of FEMME model results |
fExoticOptions | Rmetrics - Exotic Option Valuation |
fExtremes | Rmetrics - Extreme Financial Market Data |
ff | flat-file library |
ffmanova | Fifty-fifty MANOVA |
fgac | Generalized Archimedean Copula |
fGarch | Rmetrics - Autoregressive Conditional Heteroskedastic Modelling |
fields | Tools for spatial data |
FieldSim | Random fields simulations |
filehash | Simple key-value database |
filehashSQLite | Simple key-value database using SQLite |
fImport | Rmetrics - Economic and Financial Data Import |
financial | Solving financial problems in R |
fingerprint | Functions to operate on binary fingerprint data |
FKBL | fuzzy knowledge base learning |
flexclust | Flexible Cluster Algorithms |
flexmix | Flexible Mixture Modeling |
Flury | Data Sets from Flury, 1997 |
fmri | Analysis of fMRI experiments |
fMultivar | Rmetrics - Multivariate Market Analysis |
fNonlinear | Rmetrics - Nonlinear and Chaotic Time Series Modelling |
fOptions | Rmetrics - Basics of Option Valuation |
forecasting | Bundle of forecast, fma, Mcomp |
foreign | Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, ... |
forensic | Statistical Methods in Forensic Genetics |
fork | R functions for handling multiple processes. |
fortunes | R Fortunes |
forward | Forward search |
fpc | Fixed point clusters, clusterwise regression and discriminant plots |
fPortfolio | Rmetrics - Portfolio Selection and Optimization |
fracdiff | Fractionally differenced ARIMA aka ARFIMA(p,d,q) models |
FracSim | Simulation of L?y motions |
fractal | Insightful Fractal Time Series Modeling and Analysis |
frailtypack | Frailty models using maximum penalized likelihood estimation |
fRegression | Rmetrics - Regression Based Decision and Prediction |
fSeries | Rmetrics - Financial Time Series Objects |
fso | Fuzzy Set Ordination |
ftnonpar | Features and Strings for Nonparametric Regression |
fTrading | Rmetrics - Technical Trading Analysis |
FunCluster | Functional Profiling of Microarray Expression Data |
fUnitRoots | Rmetrics - Trends and Unit Roots |
fUtilities | Utilities - Rmetrics Function Utilities |
fuzzyFDR | Exact calculation of fuzzy decision rules for multiple testing |
fuzzyRankTests | Fuzzy Rank Tests and Confidence Intervals |
fxregime | Exchange Rate Regime Analysis |
g.data | Delayed-Data Packages |
G1DBN | A package performing Dynamic Bayesian Network inference. |
gafit | Genetic Algorithm for Curve Fitting |
gam | Generalized Additive Models |
gamair | Data for "GAMs: An Introduction with R" |
GAMBoost | Generalized additive models by likelihood based boosting |
gamlss.cens | Fitting interval response variabble using gamlss.family distributions |
gamlss.dist | Extra distributions to be used for GAMLSS modelling. |
gamlss.mx | A GAMLSS add on package for fitting mixtute distributions |
gamlss.nl | Fitting non linear parametric GAMLSS models |
gamlss.tr | Generating and fitting truncated (gamlss.family) distributions |
gamlss | Generalized Additive Models for Location Scale and Shape. |
gap | Genetic analysis package |
gbev | Gradient Boosted Regression Trees with Errors-in-Variables |
gbm | Generalized Boosted Regression Models |
gcl | Compute a fuzzy rules or tree classifier from data |
gclus | Clustering Graphics |
gcmrec | General class of models for recurrent event data |
gdata | Various R programming tools for data manipulation |
GDD | GD device for creating bitmap graphics as jpeg, png or gif files using gd library |
gee | Generalized Estimation Equation solver |
geepack | Generalized Estimating Equation Package |
geiger | Analysis of evolutionary diversification |
GenABEL | genome-wide SNP association analysis |
genalg | R Based Genetic Algorithm |
GeneCycle | Identification of Periodically Expressed Genes |
GeneF | Package for Generalized F-statistics |
Geneland | Simulation and MCMC inference in landscape genetics |
GeneNet | Modeling and Inferring Gene Networks |
GeneNT | Relevance or Dependency network and signaling pathway discovery |
genetics | Population Genetics |
GeneTS | Microarray Time Series and Network Analysis |
GenKern | Functions for generating and manipulating kernel density estimates |
geometry | Mesh generation and surface tesselation |
geoR | Analysis of geostatistical data |
geoRglm | geoRglm - a package for generalised linear spatial models |
GeoXp | Interactive exploratory spatial data analysis |
ggm | Graphical Gaussian Models |
ggplot2 | An implementation of the Grammar of Graphics |
ggplot | An implementation of the Grammar of Graphics in R |
ghyp | A package on generalized hyperbolic distributions |
GillespieSSA | Gillespie's Stochastic Simulation Algorithm (SSA) |
giRaph | The giRaph package for graph representation in R |
gld | Estimation and use of the generalised (Tukey) lambda distribution |
GLDEX | Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Discretised and Maximum Likelihood Methods |
gllm | Generalised log-linear model |
glmc | Fitting Generalized Linear Models Subject to Constraints |
glmmAK | Generalized Linear Mixed Models |
glmmML | Generalized linear models with clustering |
glmpath | L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model |
glpk | GNU Linear Programming Kit |
gmodels | Various R programming tools for model fitting |
gmp | Multiple Precision Arithmetic |
gmt | Interface between GMT map-making software and R |
gmvalid | Validation of graphical models |
gnm | Generalized Nonlinear Models |
gnomeGUI | GNOME Console for R |
GOSim | Computation of functional similarities between GO terms and gene products |
GPArotation | GPA Factor Rotation |
gpclib | General Polygon Clipping Library for R |
gplots | Various R programming tools for plotting data |
gpls | Classification using generalized partial least squares |
granova | Graphical Analysis of Variance |
graph | graph: A package to handle graph data structures |
grasp | Generalized Regression Analysis and Spatial Prediction for R |
GRASS | Interface between GRASS 5.0 geographical information system and R |
gRbase | A package for graphical modelling in R |
gRcox | Inference in Graphical Gaussian Models with Edge and Vertex Symmetries |
gregmisc | Greg's Miscellaneous Functions |
gridBase | Integration of base and grid graphics |
grImport | Importing Vector Graphics |
grnnR | A Generalized Regression Neural Network |
grouped | Regression Analysis of Grouped and Coarse Data |
GroupSeq | Performing computations related to group sequential designs. |
grplasso | Fitting user specified models with Group Lasso penalty |
GSA | Gene set analysis |
gsl | wrapper for the Gnu Scientific Library |
GSM | Gamma Shape Mixture |
gss | General Smoothing Splines |
gstat | geostatistical modelling, prediction and simulation |
gsubfn | Utilities for strings and function arguments. |
gtkDevice | Loadable and embeddable gtk device driver for R |
gtools | Various R programming tools |
gvlma | Global Validation of Linear Models Assumptions |
gWidgets | gWidgets API for building toolkit-independent, interactive GUIs |
gWidgetsRGtk2 | Toolkit implementation of gWidgets for RGtk2 |
gWidgetsrJava | Toolkit implementation of gWidgets for rJava |
gWidgetstcltk | Toolkit implementation of gWidgets for tcltk pacakge |
hapassoc | Likelihood inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm |
haplo.ccs | Estimate Haplotype Relative Risks in Case-Control Data |
haplo.stats | Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous |
hapsim | Haplotype Data Simulation |
HardyWeinberg | Graphical tests for Hardy-Weinberg equilibrium |
hbim | Hill/Bliss Independence Model for Combination Vaccines |
hddplot | Use known groups in high-dimensional data to derive scores for plots |
hdeco | Hierarchical DECOmposition of Entropy for Categorical Map Comparisons |
hdf5 | HDF5 |
hdrcde | Highest density regions and conditional density estimation |
heatmap.plus | Heatmap with more sensible behavior. |
heplots | Visualizing Tests in Multivariate Linear Models |
hett | Heteroscedastic t regression |
hexView | Viewing Binary Files |
HFWutils | excel connections, garbage collection,string matching and passing by reference |
HH | Statistical Analysis and Data Display: Heiberger and Holland |
HI | Simulation from distributions supported by nested hyperplanes |
HiddenMarkov | Hidden Markov Models |
hier.part | Hierarchical Partitioning |
hierfstat | Estimation and tests of hierarchical F-statistics |
HighProbability | HighProbability estimates which alternative hypotheses have frequentist or Bayesian probabilities at least as great as a specified threshold, given a list of p-values. |
hints | Provide hints on what to do next |
Hmisc | Harrell Miscellaneous |
hmm.discnp | Hidden Markov models with discrete non-parametric observation distributions. |
hoa | Bundle of cond, marg, nlreg, csampling |
homals | Homogeneity Analysis |
homtest | Homogeneity tests for Regional Frequency Analysis |
hopach | Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH) |
hot | Computation on micro-arrays |
howmany | A lower bound for the number of correct rejections |
HSAUR | A Handbook of Statistical Analyses Using R |
HTMLapplets | Dynamic visualisation in HTML documents |
httpRequest | Basic HTTP Request |
hwde | Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci. |
hybridHclust | Hybrid hierarchical clustering |
HydroMe | Estimation of Soil Hydraulic Parameters from Experimental Data |
hydrosanity | Graphical user interface for exploring hydrological time series |
HyperbolicDist | The hyperbolic distribution |
ibdreg | Regression Methods for IBD Linkage With Covariates |
ICE | Iterated Conditional Expectation |
ICEinfer | Incremental Cost-Effectiveness (ICE) Statistical Inference (from Two Unbiased Samples) |
Icens | NPMLE for Censored and Truncated Data |
ICS | ICS / ICA Computation Based on two Scatter Matrices |
ICSNP | Tools for Multivariate Nonparametrics |
identity | Jacquard Condensed Coefficients of Identity |
IDPmisc | Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch) |
ifa | Independent Factor Analysis |
ifs | Iterated Function Systems |
ifultools | Insightful Research Tools |
ig | Package for the robust and classical versions of the inverse Gaussian distribution |
igraph | Routines for simple graphs, network analysis. |
iid.test | iid-test |
impute | impute: Imputation for microarray data |
ineq | Measuring inequality, concentration and poverty |
inetwork | Network Analysis and Plotting |
inline | Inline C, C++, Fortran function calls from R |
intcox | Iterated Convex Minorant Algorithm for interval censored event data |
iplots | iPlots - interactive graphics for R |
ipred | Improved Predictors |
IPSUR | Introduction to Probability and Statistics Using R |
irr | Various Coefficients of Interrater Reliability and Agreement |
irtoys | Simple interface to the estimation and plotting of IRT models |
ismev | An Introduction to Statistical Modeling of Extreme Values |
ISwR | Introductory Statistics with R |
its | Irregular Time Series |
JADE | JADE and ICA performance criteria |
JavaGD | Java Graphics Device |
JGR | JGR - Java Gui for R |
JLLprod | Nonparametric Estimation of Homothetic and Generalized Homothetic Production Functions |
JointGLM | Joint Modelling of Mean and Dispersion (outdated, see package JointModeling) |
JointModeling | Joint Modelling of Mean and Dispersion |
JudgeIt | JudgeIt |
kappalab | Non-additive measure and integral manipulation functions |
Kendall | Kendall rank correlation and Mann-Kendall trend test |
kernelPop | Spatially explicit population genetic simulations |
kernlab | Kernel Methods Lab |
KernSmooth | Functions for kernel smoothing for Wand & Jones (1995) |
kin.cohort | Analysis of kin-cohort studies |
kinship | mixed-effects Cox models, sparse matrices, and modeling data from large pedigrees |
kknn | Weighted k-Nearest Neighbors |
klaR | Classification and visualization |
klin | Linear equations with Kronecker structure |
km.ci | Confidence intervals for the Kaplan-Meier estimator |
KMsurv | Data sets from Klein and Moeschberger (1997), Survival Analysis |
knncat | Nearest-neighbor classification with categorical variables |
knnFinder | Fast Near Neighbour Search |
knnflex | A more flexible KNN |
knnTree | k-nn classification with variable selection inside leaves of a tree |
kohonen | Supervised and unsupervised self-organising maps |
ks | Kernel smoothing |
kza | Kolmogorov-Zurbenko Adaptive Filter for Image Detection |
kzft | Kolmogorov-Zurbenko Fourier Transform and Applications |
kzs | Kolmogorov-Zurbenko Spline Smoothing and Applications |
labdsv | Laboratory for Dynamic Synthetic Vegephenomenology |
labstatR | Libreria del Laboratorio di Statistica con R |
lancet.iraqmortality | Surveys of Iraq Mortality Published in The Lancet |
languageR | Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics". |
lars | Least Angle Regression, Lasso and Forward Stagewise |
laser | Likelihood Analysis of Speciation/Extinction Rates from Phylogenies |
lasso2 | L1 constrained estimation aka 'lasso' |
latentnet | Latent position and cluster models for statistical networks |
lattice | Lattice Graphics |
latticeExtra | Extra Graphical Utilities Based on Lattice |
lawstat | A R package for biostatistics, public policy and law |
lazy | Lazy Learning for Local Regression |
ldbounds | Lan-DeMets Method for Group Sequential Boundaries |
ldDesign | Design of experiments for detection of linkage disequilibrium |
LDheatmap | Graphical display of pairwise linkage disequilibria between SNPs |
leaps | regression subset selection |
LearnBayes | Functions for Learning Bayesian Inference |
lga | Tools for linear grouping analysis (LGA) |
lgtdl | A set of methods for longitudinal data objects. |
lhs | Latin Hypercube Samples |
linprog | Linear Programming / Optimization |
ljr | Logistic Joinpoint Regression |
LLAhclust | Hierarchical clustering of variables or objects based on the likelihood linkage analysis method |
LLN | Learning with latent networks |
lme4 | Linear mixed-effects models using S4 classes |
lmeSplines | lmeSplines |
LMGene | LMGene Software for Date Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays |
lmm | Linear mixed models |
lmomco | L-moments, Trimmed L-moments, L-comoments, and Many Distributions |
Lmoments | L-moments and quantile mixtures |
lmtest | Testing Linear Regression Models |
locfdr | Computes local false discovery rates |
locfit | Local Regression, Likelihood and Density Estimation. |
lodplot | Plot a genome scan |
LogConcDEAD | Maximum likelihood estimation of a log-concave density |
logcondens | Estimate a Log-Concave Probability Density from iid Observations |
LogicReg | Logic Regression |
logilasso | Analysis of sparse contingency tables with penalization approaches |
logistf | Firth's bias reduced logistic regression |
logspline | Logspline density estimation routines |
lokern | Kernel Regression Smoothing with Local or Global Plug-in Bandwidth |
longitudinal | Analysis of Multiple Time Course Data |
longmemo | Statistics for Long-Memory Processes (Jan Beran) -- Data and Functions |
LoopAnalyst | A collection of tools to conduct Levins' Loop Analysis |
LowRankQP | Low Rank Quadratic Programming |
lpridge | Local Polynomial (Ridge) Regression |
lpSolve | Interface to Lp_solve v. 5.5 to solve linear/integer programs |
lsa | Latent Semantic Analysis |
lspls | LS-PLS Models |
lss | the accelerated failure time model to right censored data based on least-squares principle |
ltm | Latent Trait Models under IRT |
luca | Likelihood inference from case-control data Under Covariate Assumptions (LUCA) |
lvplot | Level value plots for R |
maanova | Tools for analyzing Micro Array experiments |
magic | create and investigate magic squares |
mapdata | Extra Map Databases |
mapLD | Linkage Disequilibrium Mapping |
mapproj | Map Projections |
maps | Draw Geographical Maps |
maptools | Tools for reading and handling spatial objects |
maptree | Mapping, pruning, and graphing tree models |
mAr | Multivariate AutoRegressive analysis |
MarkedPointProcess | Analysis of Marks of Marked Point Processes |
MasterBayes | ML and MCMC Methods for Pedigree Reconstruction and Analysis |
Matching | Multivariate and Propensity Score Matching with Balance Optimization |
MatchIt | MatchIt |
mathgraph | Directed and undirected graphs |
matlab | MATLAB emulation package |
Matrix | A Matrix package for R |
matrixcalc | Collection of functions for matrix differential calculus |
maxstat | Maximally Selected Rank Statistics |
MBA | Multilevel B-spline Approximation |
MBESS | Methods for the Behavioral, Educational, and Social Sciences |
mblm | Median-Based Linear Models |
mboost | Model-Based Boosting |
mcgibbsit | Warnes and Raftery's MCGibbsit MCMC diagnostic |
MChtest | Monte Carlo hypothesis tests with Sequential Stopping |
mclust02 | Model-based cluster analysis (older version) |
mclust | Model-Based Clustering / Normal Mixture Modeling |
mcmc | Markov Chain Monte Carlo |
MCMCpack | Markov chain Monte Carlo (MCMC) Package |
mda | Mixture and flexible discriminant analysis |
meboot | Maximum Entropy Bootstrap for Time Series |
mefa | Faunistic count data handling and reporting |
meifly | Interactive model exploration using GGobi |
memisc | Tools for Data Management, Simulation, and Presentation of Estimates. |
MEMSS | Data sets from Mixed-effects Models in S |
merror | Accuracy and Precision of Measurements |
meta | Meta-Analysis |
MFDA | Model Based Functional Data Analysis |
mFilter | Miscellaneous time series filters |
mfp | Multivariable Fractional Polynomials |
mgcv | GAMs with GCV smoothness estimation and GAMMs by REML/PQL |
mice | Multivariate Imputation by Chained Equations |
micEcon | Microeconomics |
mimR | A package for graphical modelling in R |
minpack.lm | R interface for MINPACK least squares optimization library |
misc3d | Miscellaneous 3D Plots |
MiscPsycho | Miscellaneous Psychometrics |
mitools | Tools for multiple imputation of missing data |
mix | Estimation/multiple Imputation for Mixed Categorical and Continuous Data |
mixPHM | Mixtures of proportional hazard models. |
mixreg | Functions to fit mixtures of regressions. |
mixstock | functions for mixed stock analysis |
mixtools | Tools for mixture models. |
MKLE | Maximum kernel likelihood estimation. |
mlbench | Machine Learning Benchmark Problems |
mlCopulaSelection | Copula selection and fitting using maximum likelihood |
MLDS | Maximum Likelihood Difference Scaling |
MLEcens | Computation of the MLE for bivariate (interval) censored data |
mlegp | Maximum Likelihood Estimates of Gaussian Processes |
mlica | Independent Component Analysis using Maximum Likelihood |
mlmmm | ML estimation under multivariate linear mixed models with missing values |
mlmRev | Examples from Multilevel Modelling Software Review |
mmlcr | Mixed-Mode Latent Class Regression |
mnormt | The multivariate normal and t distributions |
MNP | R Package for Fitting the Multinomial Probit Model |
moc | GENERAL NONLINEAR MIXTURES OF CURVES |
modeest | Mode Estimation -- Chernoff Distribution |
modehunt | Multiscale Analysis for Density Functions |
modeltools | Tools and Classes for Statistical Models |
mokken | Mokken Scale Analysis in R |
moments | Moments, cumulants, skewness, kurtosis and related tests |
monomvn | Estimation for multivariate normal data with monotone missingness |
monoProc | strictly monotone smoothing procedure |
monreg | Nonparametric monotone regression |
mota | Mean Optimal Transformation Approach |
mprobit | Multivariate probit model for binary/ordinal response |
MPV | Data Sets from Montgomery, Peck and Vining's Book |
mra | Analysis of Capture-Recapture data |
mratios | Inferences for ratios of coefficients in the general linear model |
MSBVAR | Markov-Switching Bayesian Vector Autoregression Models |
msm | Multi-state Markov and hidden Markov models in continuous time |
muhaz | Hazard Function Estimation in Survival Analysis |
multcomp | Simultaneous Inference for General Linear Hypotheses |
multcompView | Visualizations of Paired Comparisons |
multic | Quantitative linkage analysis tools using the variance components approach |
multilevel | Multilevel Functions |
multinomRob | Robust Estimation of Overdispersed Multinomial Regression Models |
multtest | Resampling-based multiple hypothesis testing |
muS2RC | Splus to R Compatibility for package muStat |
mvbutils | MVB's utilities for R |
mvnmle | ML estimation for multivariate normal data with missing values. |
mvnormtest | Normality test for multivariate variables |
mvoutlier | Multivariate outlier detection based on robust methods |
mvpart | Multivariate partitioning |
mvtnorm | Multivariate Normal and T Distribution |
mvtnormpcs | Multivariate Normal and T Distribution functions of (Dunnett, 1989) |
NADA | Nondetects And Data Analysis for environmental data |
ncdf | Interface to Unidata netCDF data files |
ncomplete | ncomplete |
ncvar | High-level R Interface to NetCDF Datasets |
negenes | Estimating the number of essential genes in a genome |
NestedCohort | Survival Analysis for Cohorts with Missing Covariate Information |
network | Classes for Relational Data |
neural | Neural Networks |
nFactors | Non Graphical Solution to the Cattell Scree Test |
nFDR | Nonparametric Estimate of FDR Based on Bernstein Polynomials |
nice | Get or Set UNIX Niceness |
NISTnls | Nonlinear least squares examples from NIST |
nlme | Linear and Nonlinear Mixed Effects Models |
nlmeODE | Non-linear mixed-effects modelling in nlme using differential equations |
nlstools | Tools for nonlinear regression diagnostics |
nltm | Non-linear Transformation Models |
NMMAPSlite | NMMAPS Data Lite |
nnls | The Lawson-Hanson NNLS algorithm for non-negative least squares |
nonbinROC | ROC-type analysis for non-binary gold standards |
nor1mix | Normal (1-d) Mixture Models (S3 Classes and Methods) |
norm | Analysis of multivariate normal datasets with missing values |
normalp | Package for exponential power distributions (EPD) |
NORMT3 | Evaluates complex erf, erfc and density of sum of Gaussian and Student's t |
nortest | Tests for Normality |
noverlap | ncomplete |
np | Nonparametric kernel smoothing methods for mixed datatypes |
npmc | Nonparametric Multiple Comparisons |
npmlreg | Nonparametric maximum likelihood estimation for random effect models |
NRAIA | Data sets from "Nonlinear Regression Analysis and Its Applications" |
nsRFA | Non-supervised Regional Frequency Analysis |
numDeriv | Accurate Numerical Derivatives |
nws | R functions for NetWorkSpaces and Sleigh |
Oarray | Arrays with arbitrary offsets |
oc | OC Roll Call Analysis Software. |
oce | Analysis of Oceanographic data |
odesolve | Solvers for Ordinary Differential Equations |
odfWeave | Sweave processing of Open Document Format (ODF) files |
onion | octonions and quaternions |
optmatch | Functions for optimal matching |
orientlib | Support for orientation data |
ORMDR | ORMDR |
orthopolynom | Collection of functions for orthogonal and orthonormal polynomials |
ouch | Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses |
outliers | Tests for outliers |
oz | Plot the Australian coastline and states |
pairwiseCI | Confidence intervals for two sample comparisons |
paleoTS | Modeling evolution in paleontological time-series |
paleoTSalt | Modeling evolution in paleontological time-series (alternate paramaterization) |
pamr | Pam: prediction analysis for microarrays |
pan | Multiple imputation for multivariate panel or clustered data |
panel | Panel |
papply | Parallel apply function using MPI |
paran | Horn's Test of Principal Components/Factors |
pARtial | pARtial package |
partitions | Additive partitions of integers |
partsm | Periodic Autoregressive Time Series Models |
party | A Laboratory for Recursive Partytioning |
pastecs | Package for Analysis of Space-Time Ecological Series |
pbatR | P2BAT |
PBSmapping | PBS Mapping 2.54 |
PBSmodelling | PBS Modelling |
pcalg | Estimating the skeleton and equivalence class of a DAG |
pcaPP | Robust PCA by Projection Pursuit |
pcse | Panel-Corrected Standard Error Estimation in R |
pcurve | Principal Curve analysis |
pear | Package for Periodic Autoregression Analysis |
PearsonICA | Independent component analysis using score functions from the Pearson system |
penalized | L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model |
PerformanceAnalytics | Econometric tools for performance and risk analysis. |
permax | permax |
permtest | Permutation test to compare variability within and distance between two groups |
perturb | Tools for evaluating collinearity |
PET | Simulation and Reconstruction of PET Images |
pgam | Poisson-Gamma Additive Models. |
pgirmess | Data analysis in ecology |
pheno | Auxiliary functions for phenological data analysis |
phpSerialize | Serialize R to PHP associative array |
PHYLOGR | Functions for phylogenetically based statistical analyses |
PhySim | Phylogenetic Tree Simulation Package |
pinktoe | Graphically traverse a tree via GUI widgets or web based system |
pixmap | Bitmap Images ("Pixel Maps") |
PK | Basic Pharmacokinetics |
PKfit | A Data Analysis Tool for Pharmacokinetics |
PKtools | unified computational interfaces for population PK |
plink | IRT Separate Calibration Linking Methods |
plm | Linear models for panel data |
plotAndPlayGTK | A GUI for interactive plots using GTK+ |
plotrix | Various plotting functions |
plRasch | Log Linear by Linear Asscociation models |
pls | Partial Least Squares Regression (PLSR) and Principal Component Regression (PCR) |
plsgenomics | PLS analyses for genomics |
plugdensity | Plug-in Kernel Density Estimation |
pmg | Poor Man's GUI |
pmml | Generate PMML for various models |
poLCA | Polytomous variable Latent Class Analysis |
polspline | Polynomial spline routines |
polyapost | Simulating from the Polya posterior |
polycor | Polychoric and Polyserial Correlations |
polynom | A collection of functions to implement a class for univariate polynomial manipulations |
pomp | Partially-observed Markov processes |
popbio | Construction and analysis of matrix population models |
popgen | Statistical and Population Genetics |
poplab | Population Lab |
portfolio | Analysing equity portfolios |
portfolioSim | Framework for simulating equity portfolio strategies |
POT | Generalized Pareto Distribution and Peaks Over Threshold |
powell | Powell's UObyQA algorithm |
powerpkg | Power analyses for the affected sib pair and the TDT design |
ppc | Peak Probability Contrasts |
ppls | Penalized Partial Least Squares |
pps | Functions for PPS sampling |
prabclus | Functions for clustering of presence-absence and abundance data |
predbayescor | Classification rule based on Bayesian naive Bayes models with feature selection bias corrected |
predmixcor | Classification rule based on Bayesian mixture models with feature selection bias corrected |
PresenceAbsence | Presence-Absence Model Evaluation |
prettyR | Pretty descriptive stats. |
prim | Patient Rule Induction Method (PRIM) |
princurve | Fits a Principal Curve in Arbitrary Dimension |
ProbeR | Reliability for gene expression from Affymetrix chip |
ProbForecastGOP | Probabilistic Weather Field Forecast using the GOP method |
ProfessR | Grades Setting and Exam Maker |
proftools | Profile Output Processing Tools for R |
proj4 | A simple interface to the PROJ.4 cartographic projections library |
proptest | Tests of the Proportional Hazards Assumption |
proto | Prototype object-based programming |
proxy | Distance and Similarity Measures |
PSAgraphics | Propensity Score Analysis Graphics |
pscl | Political Science Computational Laboratory, Stanford University |
pseudo | Pseudo - observations |
pspline | Penalized Smoothing Splines |
psy | Various procedures used in psychometry |
psych | Procedures for Personality and Psychological Research |
psychometric | Applied Psychometric Theory |
psyphy | Functions for analyzing psychophysical data in R |
PTAk | Principal Tensor Analysis on k modes |
pvclust | Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling |
pwr | Basic functions for power analysis |
QCA | Qualitative Comparative Analysis |
QCAGUI | QCA Graphical User Interface |
qcc | Quality Control Charts |
qgen | Quantitative Genetics using R |
qp | q-order partial correlation graph search algorithm |
QRMlib | Provides R-language code to examine Quantitative Risk Management concepts |
qtl | Tools for analyzing QTL experiments |
qtlbim | QTL Bayesian Interval Mapping |
qtlDesign | Design of QTL experiments |
quadprog | Functions to solve Quadratic Programming Problems. |
qualV | Qualitative Validation Methods |
quantchem | Quantitative chemical analysis: calibration and evaluation of results |
quantmod | Quantitative Financial Modelling Framework |
quantreg | Quantile Regression |
quantregForest | Quantile Regression Forests |
qvalue | Q-value estimation for false discovery rate control |
qvcalc | Quasi variances for factor effects in statistical models |
R.cache | Fast and light-weight caching of objects |
R.huge | Methods for accessing huge amounts of data |
R.matlab | Read and write of MAT files together with R-to-Matlab connectivity |
R.oo | R object-oriented programming with or without references |
R.rsp | R Server Pages |
R.utils | Various programming utilities |
R2HTML | HTML exportation for R objects |
R2WinBUGS | Running WinBUGS and OpenBUGS from R / S-PLUS |
race | Racing methods for the selection of the best |
RadioSonde | Tools for plotting skew-T diagrams and wind profiles |
rake | Normalize sample weights using marginal total population weights. |
ramps | Bayesian Geostatistical Modeling with RAMPS |
randaes | Random number generator based on AES cipher |
random | True random numbers using random.org |
RandomFields | Simulation and Analysis of Random Fields |
randomForest | Breiman and Cutler's random forests for classification and regression |
randomSurvivalForest | Ishwaran and Kogalur's Random Survival Forest |
RandVar | Implementation of random variables |
rankreg | Rank regression for censored data AFT model. |
RArcInfo | Functions to import data from Arc/Info V7.x binary coverages |
RaschSampler | Rasch Sampler |
rateratio.test | Exact rate ratio test |
rattle | A graphical user interface for data mining in R using GTK |
RBGL | Interface to boost C++ graph lib |
RBloomberg | R/Bloomberg |
rbugs | Fusing R and OpenBugs |
Rcapture | Loglinear Models in Capture-Recapture Experiments |
rcdd | rcdd (C Double Description for R) |
rcdk | rcdk - Interface to the CDK Libraries |
Rcmdr | R Commander |
RcmdrPlugin.HH | Rcmdr support for the HH package |
RcmdrPlugin.TeachingDemos | Rcmdr Teaching Demos Plug-In |
RColorBrewer | ColorBrewer palettes |
rcom | R COM Client Interface and internal COM Server |
rcompgen | Completion generator for R |
rda | Shrunken Centroids Regularized Discriminant Analysis |
RDieHarder | R interface to the dieharder RNG test suite |
realized | Realized |
ref | References for R |
regress | Gaussian linear models with linear covariance structure |
regsubseq | Detect and Test Regular Sequences and Subsequences |
regtest | Regression testing |
relaimpo | Relative importance of regressors in linear models |
relations | Data Structures and Algorithms for Relations |
relax | relax -- R Editor for Literate Analysis and lateX |
relaxo | Relaxed Lasso |
reldist | Relative Distribution Methods |
Reliability | Functions for estimating parameters in software reliability models |
relimp | Relative Contribution of Effects in a Regression Model |
relsurv | Relative survival regression |
reshape | Flexibly reshape data. |
ResistorArray | electrical properties of resistor networks |
resper | Sampling from restricted permutations |
reweight | Adjustment of Survey Respondent Weights |
RFA | Regional Frequency Analysis |
RFOC | Graphics for Spherical Distributions and Earthquake Focal Mechanisms |
Rfwdmv | Forward Search for Multivariate Data |
rgcvpack | R Interface for GCVPACK Fortran Package |
rgdal | Bindings for the Geospatial Data Abstraction Library |
rgenoud | R version of GENetic Optimization Using Derivatives |
rggm | Robustified methods for Gaussian Graphical Models |
rggobi | Interface between R and GGobi |
rgl | 3D visualization device system (OpenGL) |
rgr | The GSC Applied Geochemistry EDA Package |
RGrace | RGrace |
RGraphics | Data and Functions from the book R Graphics |
RGtk2 | R bindings for Gtk 2.8.0 and above |
RHmm | Hidden Markov Models simulations and estimations |
rhosp | Side effect risks in hospital : simulation and estimation |
RiboSort | Classification and Analysis Package for Microbial Community Profiles |
Rigroup | Rigroup: Provides small integer group functions |
RII | Relative index of inequality estimation |
rimage | Image Processing Module for R |
rindex | Indexing for R |
riv | Robust instrumental variables estimator |
RJaCGH | Reversible Jump MCMC for the analysis of CGH arrays. |
rjacobi | rjacobi |
rJava | Low-level R to Java interface |
RJDBC | Provides access to databases through the JDBC interface |
rjson | JSON for R |
Rlab | Functions and Datasets Required for ST370 class |
RLadyBug | Analysis of infectious diseases using stochastic epidemic models |
rlecuyer | R interface to RNG with multiple streams |
RLMM | A Genotype Calling Algorithm for Affymetrix SNP Arrays |
RLRsim | Exact (Restricted) Likelihood Ratio tests for mixed and additive models. |
Rlsf | Interface to the LSF Queuing System |
Rmdr | R-Multifactor Dimensionality Reduction |
rmeta | Meta-analysis |
rmetasim | An individual-based population genetic simulation environment |
Rmetrics | Rmetrics - Financial Engineering and Computational Finance |
Rmpi | Interface (Wrapper) to MPI (Message-Passing Interface) |
RMySQL | R interface to the MySQL database |
RNetCDF | R Interface to NetCDF Datasets |
RobLox | Optimally robust influence curves for location and scale |
RobRex | Optimally robust influence curves for regression and scale |
robust | Insightful Robust Library |
robustbase | Basic Robust Statistics |
ROCR | Visualizing the performance of scoring classifiers. |
RODBC | ODBC Database Access |
ROptEst | Optimally robust estimation |
ROptRegTS | Optimally robust estimation for regression-type models |
ROracle | Oracle database interface for R |
Rpad | Workbook-style, web-based interface to R |
rpanel | Simple interactive controls for R using the tcltk library. |
rpart.permutation | Permutation testing of rpart models |
rpart | Recursive Partitioning |
RPMG | Graphical User Interface (GUI) for interactive R analysis sessions |
rpubchem | rpubchem - Interface to the PubChem Collection |
rpvm | R interface to PVM (Parallel Virtual Machine) |
RPyGeo | ArcGIS Geoprocessing in R via Python |
rqmcmb2 | Markov Chain Marginal Bootstrap for Quantile Regression |
RQuantLib | R interface to the QuantLib library |
rrcov | Scalable Robust Estimators with High Breakdown Point |
rrp | Random Recursive Partitioning |
Rsac | Seismic analysis tools in R |
RSAGA | SAGA Geoprocessing and Terrain Analysis in R |
rsbml | R support for SBML, using libsbml |
RScaLAPACK | A seamless interface to perform parallel computation on linear algebra problems using the ScaLAPACK library. |
Rserve | Binary R server |
rsprng | R interface to SPRNG (Scalable Parallel Random Number Generators) |
RSQLite | SQLite interface for R |
rstream | Streams of random numbers |
RSvgDevice | An R SVG graphics device. |
RSVGTipsDevice | An R SVG graphics device with dynamic tips and hyperlinks |
rtiff | A tiff reader for R. |
RTisean | R interface to Tisean algorithms |
RUnit | R Unit test framework |
Runuran | R interface to the UNU.RAN random variate generators |
rv | Simulation-based random variable object class in R |
Rvelslant | Downhole Seismic Analysis in R |
Rwave | Time-Frequency analysis of 1-D signals |
RWeka | R/Weka interface |
RWinEdt | R-WinEdt |
rwt | Rice Wavelet Toolbox wrapper |
RXshrink | Maximum Likelihood Shrinkage via Ridge or Least Angle Regression |
Ryacas | R interface to the yacas computer algebra system |
sac | Semiparametric Analysis of Changepoint |
sampfling | Sampford sampling (w/o replacement and unequal probabilities) |
sampling | Survey Sampling |
samr | SAM: Significance Analysis of Microarrays |
sandwich | Robust Covariance Matrix Estimators |
sapa | Insightful Spectral Analysis for Physical Applications |
SASmixed | Data sets from "SAS System for Mixed Models" |
SASxport | Read and Write SAS XPORT Files |
sbgcop | Semiparametric Bayesian Gaussian copula estimation |
sca | Simple Component Analysis |
scagnostics | Compute scagnostics. |
scaleboot | Approximately Unbiased P-values via Multiscale Bootstrap |
scape | Statistical catch-at-age plotting environment |
scapeMCMC | MCMC diagnostic plots |
scatterplot3d | 3D Scatter Plot |
schoolmath | Functions and datasets for math used in school |
sciplot | Scientific Graphing Functions for Factorial Designs |
SciViews | Bundle of svMisc, svIO, svViews, svDialogs, svSocket, svGUI, svIDE, svWidgets |
scope | Data Manipulation Using Arbitrary Row and Column Criteria |
scuba | Scuba diving calculations and decompression models |
sdcMicro | Statistical Disclosure Control methods for the generation of public- and scientific-use files. |
sde | Simulation and Inference for Stochastic Differential Equations |
seacarb | Calculates parameters of the seawater carbonate system |
seas | Seasonal analysis and graphics, especially for climatology |
seewave | Time wave analysis and graphical representation |
segmented | Segmented relationships in regression models |
sem | Structural Equation Models |
SemiPar | Semiparametic Regression |
sendplot | Tool for sending interactive plots |
sensitivity | Sensitivity Analysis |
SensoMineR | Sensory data analysis with R |
SenSrivastava | Datasets from Sen & Srivastava |
seqinr | Biological Sequences Retrieval and Analysis |
SeqKnn | Sequential KNN imputation method |
seqmon | Sequential Monitoring of Clinical Trials |
seriation | Infrastructure for seriation |
session | Functions for interacting with, saving and restoring R sessions. |
setRNG | Set (normal) random number generator and seed |
sets | Sets and Generalized Sets |
sfsmisc | Utilities from Seminar fuer Statistik ETH Zurich |
sgeostat | An Object-oriented Framework for Geostatistical Modeling in S+ |
shapefiles | Read and Write ESRI Shapefiles |
shapes | Statistical shape analysis |
SharedHT2 | Shared Hotelling T2 test for small sample microarray experiments |
sigma2tools | Test of hypothesis about sigma2 |
signal | Signal processing |
signalextraction | Real-Time Signal Extraction (Direct Filter Approach) |
simba | A Collection of functions for similarity calculation of binary data |
simco | A package to import Structure files and deduce similarity coefficients from them |
simecol | Simulation of ecological (and other) dynamic systems |
simex | SIMEX- and MCSIMEX-Algorithm for measurement error models |
SimHap | A comprehensive modeling framework for epidemiological outcomes and a multiple-imputation approach to haplotypic analysis of population-based data |
simpleboot | Simple Bootstrap Routines |
SIN | A SINful Approach to Selection of Gaussian Graphical Markov Models |
skewt | The Skewed Student-t Distribution |
SLmisc | Miscellaneous Functions for analysis of gene expression data at SIRS-Lab GmbH |
sm | Smoothing methods for nonparametric regression and density estimation |
sma | Statistical Microarray Analysis |
smatr | (Standardised) Major Axis Estimation and Testing Routines |
smoothSurv | Survival Regression with Smoothed Error Distribution |
smoothtail | Smooth Estimation of GPD Shape Parameter |
SMPracticals | Practicals for use with Davison (2003) Statistical Models |
sn | The skew-normal and skew-t distributions |
sna | Tools for Social Network Analysis |
snow | Simple Network of Workstations |
Snowball | Snowball Stemmers |
snowFT | Fault Tolerant Simple Network of Workstations |
snp.plotter | snp.plotter |
SNPassoc | SNPs-based whole genome association studies |
SNPmaxsel | Maximally selected statistics for SNP data |
snpXpert | Tools to analysis SNP data |
som | Self-Organizing Map |
SoPhy | Soil Physics Tools |
sound | A Sound Interface for R |
sp | classes and methods for spatial data |
spam | SPArse Matrix |
SparseLogReg | Sparse logistic regression |
SparseM | Sparse Linear Algebra |
spatclus | Arbitrarily Shaped Multiple Spatial Cluster Detection for Case Event Data. |
spatgraphs | Graphs for spatial point patterns |
spatialCovariance | Computation of spatial covariance matrices for data on rectangles |
spatialkernel | Nonparameteric estimation of spatial segregation in a multivariate point process |
SpatialNP | Multivariate nonparametric methods based on spatial signs and ranks |
spatstat | Spatial Point Pattern analysis, model-fitting, simulation, tests |
spBayes | Univariate and Multivariate Spatial Modeling |
spc | Statistical Process Control |
spdep | Spatial dependence: weighting schemes, statistics and models |
spe | Stochastic Proximity Embedding |
spectralGP | Approximate Gaussian processes using the Fourier basis |
spectrino | Spectra organizer, visualization and data extraction |
spgrass6 | Interface between GRASS 6 geographical information system and R |
spgwr | Geographically weighted regression |
SpherWave | Spherical Wavelets and SW-based Spatially Adaptive Methods |
splancs | Spatial and Space-Time Point Pattern Analysis |
splus2R | Insightful package providing missing S-PLUS functionality in R |
spsurvey | Spatial Survey Design and Analysis |
sqldf | Perform SQL Selects on R Data Frames |
SQLiteDF | Stores data frames & matrices in SQLite tables |
SRPM | Shared Reproducibility Package Management |
ssanv | Sample Size Adjusted for Nonadherence or Variability of input parameters |
sspir | State Space Models in R |
sspline | Smoothing Splines on the Sphere |
st | Shrinkage t Statistic |
staRt | Inferenza classica con TI-83 Plus |
startupmsg | Utilities for start-up messages |
stashR | A Set of Tools for Administering SHared Repositories |
StatDA | Statistical Analysis for Environmental Data |
StatDataML | Read and write StatDataML files |
statmod | Statistical Modeling |
stepPlr | L2 penalized logistic regression with a stepwise variable selection |
stepwise | Stepwise detection of recombination breakpoints |
stinepack | Stineman, a consistently well behaved method of interpolation |
stochasticGEM | R Package for Fitting Stochastic General Epidemic Models |
stochmod | Stochastic Modeling |
stream.net | Building and analyzing binary stream networks |
strucchange | Testing, Monitoring and Dating Structural Changes |
subselect | Selecting variable subsets |
sudoku | Sudoku Puzzle Generator and Solver |
supclust | Supervised Clustering of Genes |
superpc | Supervised principal components |
SuppDists | Supplementary distributions |
surv2sample | Two-Sample Tests for Survival Analysis |
survBayes | Fits a proportional hazards model to time to event data by a Bayesian approach |
surveillance | Outbreak detection algorithms for surveillance data |
survey | analysis of complex survey samples |
surveyNG | experimental revision of survey package |
survival | Survival analysis, including penalised likelihood. |
survrec | Survival analysis for recurrent event data |
svcm | 2d and 3d Space-Varying Coefficient Models |
svcR | svcR package |
svmpath | svmpath: the SVM Path algorithm |
SwissAir | Air Quality Data of Switzerland for one year in 30 min Resolution |
Synth | Synthetic Control Group Method for Comparative Case Studies |
systemfit | Simultaneous Equation Estimation Package |
taskPR | Task-Parallel R Package |
tcltk2 | SciViews GUI API - More tcltk |
tdist | Distribution of a linear combination of independent Student's t-variables |
tdm | A Tool for Therapeutic Drug Monitoring (TDM) |
TeachingDemos | Demonstrations for teaching and learning |
tensor | Tensor product of arrays |
tensorA | Advanced tensors arithmetic with named indices |
termstrc | Term Structure and Credit Spread Estimation |
tframe | Time Frame coding kernel |
tgp | Bayesian treed Gaussian process models |
time | Time tracking for developers |
TIMP | a problem solving environment for fitting superposition models |
timsac | TIMe Series Analysis and Control package |
titan | Titration analysis for mass spectrometry data |
titecrm | Time-to-event continual reassessment method and calibration tools |
tkrgl | TK widget tools for rgl package |
tkrplot | TK Rplot |
tlnise | Two-level normal independent sampling estimation |
tm | Text Mining Package |
trackObjs | Track Objects |
tradeCosts | Trade Cost Analysis |
TRAMPR | TRFLP Analysis and Matching Package for R |
tree | Classification and regression trees |
treeglia | Stem-analysis on tree cross-sections |
triangle | Provides the standard distribution functions for the triangle distribution |
trimcluster | Cluster analysis with trimming |
trip | Spatial analysis of animal track data |
tripack | Triangulation of irregularly spaced data |
tripEstimation | Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes |
truncgof | GoF tests allowing for left truncated data |
trust | Trust Region Optimization |
TSdbi | Time Series Database Interface |
tsDyn | Time series analysis based on dynamical systems theory |
tseries | Time series analysis and computational finance |
tseriesChaos | Analysis of nonlinear time series |
tsfa | Time Series Factor Analysis |
TSMySQL | Time Series Database Interface extensions for MySQL |
TSP | Traveling Salesperson Problem (TSP) |
TSpadi | TSdbi Interface to PADI Time Series Server (for e.g. Fame) |
TSSQLite | Time Series Database Interface extentions for SQLite |
TTR | Technical Trading Rules |
tuneR | Analysis of music |
tutoR | Student-friendly package to mask common functions, straight-to-the-point with examples for help, and deskcheck() for debugging User defined functions. |
twang | Toolkit for Weighting and Analysis of Nonequivalent Groups |
tweedie | Tweedie exponential family models |
TWIX | Trees WIth eXtra splits |
TwoWaySurvival | Additiv Two-Way Hazards Modelling of Right Censored Survival Data |
twslm | A two-way semilinear model for normalization and analysis of cDNA microarray data. |
TwslmSpikeWeight | Systematic approaches using TW-SLM for incorporating control spots and data quality information to improve normalization of cDNA microarray data. |
udunits | interface to Unidata's routines to convert units |
Umacs | Universal Markov chain sampler |
ump | Uniformly Most Powerful Tests |
unbalhaar | Function estimation via Unbalanced Haar wavelets |
UNF | Tools for creating universal numeric fingerprints for data. |
untb | ecological drift under the UNTB |
urca | Unit root and cointegration tests for time series data |
urn | Urn : Sampling Without Replacement |
uroot | Unit Root Tests and Graphics for Seasonal Time Series |
UsingR | Data sets for the text "Using R for Introductory Statistics" |
USPS | Unsupervised and Supervised methods of Propensity Score Adjustment for Bias |
vabayelMix | Variational Bayesian Mixture Modelling |
VaR | Value at Risk estimation |
vardiag | A package for variogram diagnostics |
varmixt | Mixture model on the Variance for the analysis of gene expression data |
vars | VAR Modelling |
varSelRF | Variable selection using random forests |
vbmp | Variational Bayesian Multinomial Probit Regression |
vcd | Visualizing Categorical Data |
VDCutil | utilities supporting the VDC system |
vegan | Community Ecology Package |
verification | Forecast verification utilities. |
verify | Construction of test suites using verify objects |
VGAM | Vector Generalized Linear and Additive Models |
vioplot | Violin plot |
VLMC | VLMC -- Variable Length Markov Chains |
VR | Bundle of MASS, class, nnet, spatial |
vrtest | Variance Ratio tests for Weak-form Market Efficiency |
waved | Wavelet Deconvolution |
wavelets | A package of funtions for computing wavelet filters, wavelet transforms and multiresolution analyses |
waveslim | Basic wavelet routines for one-, two- and three-dimensional signal processing |
wavethresh | Software to perform wavelet statistics and transforms. |
wccsom | SOM networks for comparing patterns with peak shifts |
WeedMap | Map of weed intensity |
WhatIf | WhatIf: Software for Evaluating Counterfactuals |
wikibooks | Functions and datasets of the german WikiBook "GNU R" |
WilcoxCV | Wilcoxon-based variable selection in cross-validation |
wle | Weighted Likelihood Estimation |
wmtsa | Insightful Wavelet Methods for Time Series Analysis |
wnominate | WNOMINATE Roll Call Analysis Software. |
wombsoft | Wombling Computation |
wordnet | WordNet Interface |
write.snns | Function for exporting data to SNNS pattern files. |
WWGbook | Functions and datasets for WWGbook. |
xgobi | Interface to the XGobi and XGvis programs for graphical data analysis |
xlsReadWrite | Natively read and write Excel files |
XML | Tools for parsing and generating XML within R and S-Plus. |
xtable | Export tables to LaTeX or HTML |
yaImpute | yaImpute: An R Package for k-NN Imputation |
YaleToolkit | Data exploration tools from Yale University. |
yest | Gaussian Independence Models |
Zelig | Everyone's Statistical Software |
zicounts | Counts data models: zero-inflation as well as interval icensored |
ZIGP | Zero Inflated Generalized Poisson (ZIGP) regression models |
zipfR | Statistical models for word frequency distributions |
zoeppritz | Zoeppritz Equations |
zoo | Z's ordered observations |
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